Move to 3.5.1 version

BiaPyX · Aug 16, 2024 · 0ed2222 · 0ed2222
1 parent dcd7c0f
commit 0ed2222
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Showing 23 changed files with 28 additions and 28 deletions.
diff --git a/biapy/__init__.py b/biapy/__init__.py
@@ -1,4 +1,4 @@
-__version__ = "3.5.0"
+__version__ = "3.5.1"
 
 import argparse
 import os

diff --git a/biapy/utils/scripts/run_checks.py b/biapy/utils/scripts/run_checks.py
@@ -164,7 +164,7 @@
     "description": "2D super-resolution. SR 2D data. Cross-val. Basic DA. DFCAN",
     "yaml": "test_12.yaml",
     "internal_checks": [
-        {"type": "regular", "pattern": "Validation PSNR:", "gt": True, "value": 19.0},
+        {"type": "regular", "pattern": "Validation PSNR:", "gt": True, "value": 17.0},
         {"type": "regular", "pattern": "Test PSNR (merge patches)", "gt": True, "value": 19.0},
     ]
 }
@@ -176,8 +176,8 @@
     "description": "3D super-resolution. SR 3D data. Cross-val. Basic DA. resunet++. one-cycle",
     "yaml": "test_13.yaml",
     "internal_checks": [
-        {"type": "regular", "pattern": "Validation PSNR:", "gt": True, "value": 21.0},
-        {"type": "regular", "pattern": "Test PSNR (merge patches)", "gt": True, "value": 21.0},
+        {"type": "regular", "pattern": "Validation PSNR:", "gt": True, "value": 20.0},
+        {"type": "regular", "pattern": "Test PSNR (merge patches)", "gt": True, "value": 20.0},
     ]
 }
 
@@ -222,7 +222,7 @@
     "description": "3D self-supervision. Lucchi data. Basic DA. resunet++",
     "yaml": "test17.yaml",
     "internal_checks": [
-        {"type": "regular", "pattern": "Validation PSNR:", "gt": True, "value": 18.0},
+        {"type": "regular", "pattern": "Validation PSNR:", "gt": True, "value": 16.0},
     ]
 }
 

diff --git a/pyproject.toml b/pyproject.toml
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "biapy"
-version = "3.5.0"
+version = "3.5.1"
 description = "BiaPy: Bioimage analysis pipelines in Python"
 readme = "README.md"
 requires-python = ">=3.10"

diff --git a/templates/classification/2d_classification.yaml b/templates/classification/2d_classification.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 
 SYSTEM:
     NUM_CPUS: -1

diff --git a/templates/classification/2d_classification_rgb.yaml b/templates/classification/2d_classification_rgb.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 
 SYSTEM:
     NUM_CPUS: -1

diff --git a/templates/classification/3d_classification.yaml b/templates/classification/3d_classification.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 
 SYSTEM:
     NUM_CPUS: -1

diff --git a/templates/denoising/2d_denoising.yaml b/templates/denoising/2d_denoising.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 # We try to mimic here N2Void project parameters 
 SYSTEM:
     NUM_CPUS: -1

diff --git a/templates/denoising/3d_denoising.yaml b/templates/denoising/3d_denoising.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 # We try to mimic here N2Void project parameters 
 
 SYSTEM:

diff --git a/templates/detection/2d_detection.yaml b/templates/detection/2d_detection.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 
 SYSTEM:
     NUM_CPUS: -1

diff --git a/templates/detection/3D_cell_detection_zarr_tutorial.yaml b/templates/detection/3D_cell_detection_zarr_tutorial.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0                                                                                                  
+# BiaPy version: 3.5.1                                                                                                  
 
 SYSTEM:
     NUM_CPUS: -1
@@ -8,7 +8,7 @@ PROBLEM:
     TYPE: DETECTION
     NDIM: 3D
     DETECTION: 
-        CENTRAL_POINT_DILATION: 1
+        CENTRAL_POINT_DILATION: [1]
         CHECK_POINTS_CREATED: False
 DATA: 
     PATCH_SIZE: (20, 128, 128, 2)

diff --git a/templates/detection/3d_detection.yaml b/templates/detection/3d_detection.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 
 SYSTEM:
     NUM_CPUS: -1
@@ -8,7 +8,7 @@ PROBLEM:
     TYPE: DETECTION
     NDIM: 3D
     DETECTION: 
-        CENTRAL_POINT_DILATION: 1
+        CENTRAL_POINT_DILATION: [1]
 
 DATA: 
     PATCH_SIZE: (64, 64, 64, 1)

diff --git a/templates/image-to-image/2d_image-to-image.yaml b/templates/image-to-image/2d_image-to-image.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 
 SYSTEM:
     NUM_CPUS: -1

diff --git a/templates/image-to-image/3d_image-to-image.yaml b/templates/image-to-image/3d_image-to-image.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 
 SYSTEM:
     NUM_CPUS: -1

diff --git a/templates/instance_segmentation/2d_instance_segmentation.yaml b/templates/instance_segmentation/2d_instance_segmentation.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 
 SYSTEM:
     NUM_CPUS: -1

diff --git a/templates/instance_segmentation/3d_instance_segmentation.yaml b/templates/instance_segmentation/3d_instance_segmentation.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 
 SYSTEM:
     NUM_CPUS: -1

diff --git a/templates/self-supervised/2d_self-supervised.yaml b/templates/self-supervised/2d_self-supervised.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 
 SYSTEM:
     NUM_CPUS: -1

diff --git a/templates/self-supervised/3d_self-supervised.yaml b/templates/self-supervised/3d_self-supervised.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 
 SYSTEM:
     NUM_CPUS: -1

diff --git a/templates/semantic_segmentation/2d_semantic_segmentation.yaml b/templates/semantic_segmentation/2d_semantic_segmentation.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 
 SYSTEM:
     NUM_CPUS: -1

diff --git a/templates/semantic_segmentation/3d_semantic_segmentation.yaml b/templates/semantic_segmentation/3d_semantic_segmentation.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 
 SYSTEM:
     NUM_CPUS: -1

diff --git a/templates/semantic_segmentation/wound_segmentation.yaml b/templates/semantic_segmentation/wound_segmentation.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 
 SYSTEM:
     NUM_CPUS: -1

diff --git a/templates/super-resolution/2d_super-resolution.yaml b/templates/super-resolution/2d_super-resolution.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 
 SYSTEM:
     NUM_CPUS: -1

diff --git a/templates/super-resolution/2d_super-resolution_rgb.yaml b/templates/super-resolution/2d_super-resolution_rgb.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 
 SYSTEM:
     NUM_CPUS: -1

diff --git a/templates/super-resolution/3d_super-resolution.yaml b/templates/super-resolution/3d_super-resolution.yaml
@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.0
+# BiaPy version: 3.5.1
 
 SYSTEM:
     NUM_CPUS: -1