Update to 3.5.2 version

biapy/__init__.py

@@ -1,4 +1,4 @@
-__version__ = "3.5.1"
+__version__ = "3.5.2"
 
 import argparse
 import os

biapy/utils/env/Dockerfile

@@ -31,14 +31,14 @@ RUN conda update -qy conda \
 SHELL ["conda", "run", "-n", "BiaPy_env", "/bin/bash", "-c"]
 
 # Install BiaPy
-RUN pip install biapy==3.4.3
+RUN pip install biapy==3.5.2
 
 # Install Pytorch 2.2.0 + CUDA 11.8
-RUN pip install torch==2.2.0 torchvision==0.17.0 torchaudio==2.2.0 --index-url https://download.pytorch.org/whl/cu118
-RUN pip install timm torchmetrics
+RUN pip install torch==2.4.0 torchvision==0.19.0 torchaudio==2.4.0 --index-url https://download.pytorch.org/whl/cu118 
+RUN pip install timm pytorch-msssim torchmetrics[image]
 
 # Clone BiaPy, as running it with python -c "" stops the container with no error after a few seconds running 
-RUN git clone --depth 1 https://github.com/BiaPyX/BiaPy.git  --branch v3.4.3 /installations/BiaPy
+RUN git clone --depth 1 https://github.com/BiaPyX/BiaPy.git  --branch v3.5.2 /installations/BiaPy
 
 # To remove CuDNN issue 
 WORKDIR /installations/miniconda3/envs/BiaPy_env/lib/python3.10/site-packages/nvidia/cuda_nvrtc/lib/

biapy/utils/env/Dockerfile_CUDA10.2

@@ -32,14 +32,14 @@ RUN conda update -qy conda \
 SHELL ["conda", "run", "-n", "BiaPy_env", "/bin/bash", "-c"]
 
 # Install BiaPy
-RUN pip install biapy==3.4.3
+RUN pip install biapy==3.5.2
 
 # Install Pytorch 1.12.1 + CUDA 10.2
 RUN conda install pytorch==1.12.1 torchvision==0.13.1 torchaudio==0.12.1 cudatoolkit=10.2 -c pytorch
-RUN pip install timm torchmetrics
+RUN pip install timm pytorch-msssim torchmetrics[image]
 
 # Clone BiaPy, as running it with python -c "" stops the container with no error after a few seconds running
-RUN git clone --depth 1 https://github.com/BiaPyX/BiaPy.git  --branch v3.4.3 /installations/BiaPy
+RUN git clone --depth 1 https://github.com/BiaPyX/BiaPy.git  --branch v3.5.2 /installations/BiaPy
 
 # To remove CuDNN issue 
 WORKDIR /installations/miniconda3/envs/BiaPy_env/lib/python3.10/site-packages/nvidia/cuda_nvrtc/lib/

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "biapy"
-version = "3.5.1"
+version = "3.5.2"
 description = "BiaPy: Bioimage analysis pipelines in Python"
 readme = "README.md"
 requires-python = ">=3.10"

templates/classification/2d_classification.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 
 SYSTEM:
     NUM_CPUS: -1

templates/classification/2d_classification_rgb.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 
 SYSTEM:
     NUM_CPUS: -1

templates/classification/3d_classification.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 
 SYSTEM:
     NUM_CPUS: -1

templates/denoising/2d_denoising.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 # We try to mimic here N2Void project parameters 
 SYSTEM:
     NUM_CPUS: -1

templates/denoising/3d_denoising.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 # We try to mimic here N2Void project parameters 
 
 SYSTEM:

templates/detection/2d_detection.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 
 SYSTEM:
     NUM_CPUS: -1

templates/detection/3D_cell_detection_zarr_tutorial.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1                                                                                                  
+# BiaPy version: 3.5.2                                                                                                  
 
 SYSTEM:
     NUM_CPUS: -1

templates/detection/3d_detection.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 
 SYSTEM:
     NUM_CPUS: -1

templates/image-to-image/2d_image-to-image.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 
 SYSTEM:
     NUM_CPUS: -1

templates/image-to-image/3d_image-to-image.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 
 SYSTEM:
     NUM_CPUS: -1

templates/instance_segmentation/2d_instance_segmentation.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 
 SYSTEM:
     NUM_CPUS: -1

templates/instance_segmentation/3d_instance_segmentation.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 
 SYSTEM:
     NUM_CPUS: -1

templates/self-supervised/2d_self-supervised.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 
 SYSTEM:
     NUM_CPUS: -1

templates/self-supervised/3d_self-supervised.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 
 SYSTEM:
     NUM_CPUS: -1

templates/semantic_segmentation/2d_semantic_segmentation.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 
 SYSTEM:
     NUM_CPUS: -1

templates/semantic_segmentation/3d_semantic_segmentation.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 
 SYSTEM:
     NUM_CPUS: -1

templates/semantic_segmentation/wound_segmentation.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 
 SYSTEM:
     NUM_CPUS: -1

templates/super-resolution/2d_super-resolution.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 
 SYSTEM:
     NUM_CPUS: -1

templates/super-resolution/2d_super-resolution_rgb.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 
 SYSTEM:
     NUM_CPUS: -1

templates/super-resolution/3d_super-resolution.yaml

@@ -1,4 +1,4 @@
-# BiaPy version: 3.5.1
+# BiaPy version: 3.5.2
 
 SYSTEM:
     NUM_CPUS: -1