Major:
- Add configuration file backward-compatibility
- Add
U-NeXt V2
model - Actions added:
- Add
check_code_consistency.yml
action to test code consistency (every week) - Add
upload_biapy_to_pypi.yml
to automatically create a PyPI package (when a new release is created) - Add
create_release_container.yml
file to automatically create and update docker containers to Dockerhub (when a new release is created)
- Add
Minor:
- Update BMZ model creation and compatibility:
- Add cover creation and create
environment.yaml
to be packaged in the BMZ model - Add
sigmoid
activation as BMZ postprocessing so we are more compatible - Extract just the
pytorch_state_dict
from the checkpoint when creating BMZ package - Save correct input/output (prediction) for BMZ package
- Move to
bioimageio.core==0.7.0
- Change slightly the normalization so it can match the one done in BMZ
- Add cover creation and create
Bugs fixed:
- Fix BMZ model compatibility checks
- Update notebooks to avoid BMZ error when fields are
None
- Fix bug on BMZ zip creation in the notebooks
- Fix missing letter
'S'
in configuration variable'SIGNS
'. - Disabling percentile clipping as that is not done by default in BMZ's
scale_range
normalization
Full Changelog: v3.5.5...v3.5.6