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Version 3.5.6

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@danifranco danifranco released this 28 Nov 17:05
· 46 commits to master since this release

Major:

  • Add configuration file backward-compatibility
  • Add U-NeXt V2 model
  • Actions added:
    • Add check_code_consistency.yml action to test code consistency (every week)
    • Add upload_biapy_to_pypi.yml to automatically create a PyPI package (when a new release is created)
    • Add create_release_container.yml file to automatically create and update docker containers to Dockerhub (when a new release is created)

Minor:

  • Update BMZ model creation and compatibility:
    • Add cover creation and create environment.yaml to be packaged in the BMZ model
    • Add sigmoid activation as BMZ postprocessing so we are more compatible
    • Extract just the pytorch_state_dict from the checkpoint when creating BMZ package
    • Save correct input/output (prediction) for BMZ package
    • Move to bioimageio.core==0.7.0
    • Change slightly the normalization so it can match the one done in BMZ

Bugs fixed:

  • Fix BMZ model compatibility checks
  • Update notebooks to avoid BMZ error when fields are None
  • Fix bug on BMZ zip creation in the notebooks
  • Fix missing letter 'S' in configuration variable 'SIGNS'.
  • Disabling percentile clipping as that is not done by default in BMZ's scale_range normalization

Full Changelog: v3.5.5...v3.5.6