MIN Warn on empty FASTA files

Probably reflects user error and this can help them debug it
BigDataBiology · Oct 3, 2023 · bdc1087 · bdc1087
1 parent 6dc33b0
commit bdc1087
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/SemiBin/utils.py b/SemiBin/utils.py
@@ -497,6 +497,8 @@ def process_fasta(fasta_path, ratio):
 
     binned_short = contig_bp_2500 / whole_contig_bp < ratio
     must_link_threshold = get_must_link_threshold(contig_length_list)
+    if not contig_dict:
+        logger.warning(f'No contigs in {fasta_path}')
     return binned_short, must_link_threshold, contig_dict