Fix: packages updated (#25)

* paired with Zoe to get packages updated * update package lock * include test script for npm * remove storybook * added back noEmit flag * fixed problems with run build * wrap setState in array instead of array of setState * don't use any type * no any types * remove any type
BioAnalyticResource · Oct 5, 2023 · fc267e0 · fc267e0
1 parent 0ff0701
commit fc267e0
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Showing 13 changed files with 17,629 additions and 50,633 deletions.
diff --git a/.eslintrc.js → .eslintrc.cjs b/.eslintrc.js → .eslintrc.cjs
@@ -22,5 +22,6 @@ module.exports = {
   rules: {
     '@typescript-eslint/no-empty-function': 'off',
     '@typescript-eslint/no-explicit-any': 'off',
+    '@typescript-eslint/no-unused-vars': 'off'
   },
 }
diff --git a/.storybook/main.js b/.storybook/main.js
diff --git a/.storybook/preview.js b/.storybook/preview.js
diff --git a/Eplant/Eplant.tsx b/Eplant/Eplant.tsx
@@ -305,7 +305,8 @@ function EplantLayout() {
   // Update the model when the activeId changes
   React.useEffect(() => {
     if (model.getNodeById(activeId)) model.doAction(Actions.selectTab(activeId))
-    else model.doAction(Actions.deselectTabset())
+    // TODO: Need to add back if using flex-layout from Alex's fork
+    // else model.doAction(Actions.deselectTabset())
   }, [activeId, model])
 
   // Add a new tab when there is a non-popout pane

diff --git a/Eplant/UI/GeneticElementComponent.tsx b/Eplant/UI/GeneticElementComponent.tsx
@@ -92,7 +92,7 @@ export default function GeneticElementComponent({
 
   const [textScroll, setTextScroll] = useState<boolean>(false)
 
-  const textGroupRef = useRef<HTMLDivElement>()
+  const textGroupRef = useRef<HTMLDivElement>(null)
   const textContainerRef = useRef<HTMLDivElement>()
 
   const menuId = useId()

diff --git a/Eplant/View/viewData.ts b/Eplant/View/viewData.ts
@@ -38,13 +38,13 @@ export type UseViewDataType<T, S, A> = ViewDataType<T> & {
 const viewDataAtoms: {
   [key: string]: WritableAtom<
     ViewDataType<unknown>,
-    React.SetStateAction<ViewDataType<unknown>>,
+    [React.SetStateAction<ViewDataType<unknown>>],
     void
   >
 } = {}
 
 const viewStateAtoms: {
-  [key: string]: WritableAtom<unknown, React.SetStateAction<unknown>, void>
+  [key: string]: WritableAtom<unknown, [React.SetStateAction<unknown>], void>
 } = {}
 
 function getViewAtom(key: string) {

diff --git a/Eplant/main.tsx b/Eplant/main.tsx
@@ -51,7 +51,7 @@ function RootApp() {
   const [darkMode, setDarkMode] = useDarkMode()
   return (
     <React.StrictMode>
-      <Provider scope={eplantScope}>
+      <Provider>
         <ThemeProvider theme={darkMode ? dark : light}>
           <CssBaseline />
           <BrowserRouter>

diff --git a/Eplant/state/index.tsx b/Eplant/state/index.tsx
@@ -131,7 +131,7 @@ function atomWithOptionalStorage<T>(
 }
 
 function useAtomReducer<T, A>(
-  atom: WritableAtom<T, React.SetStateAction<T>, void>,
+  atom: WritableAtom<T, [React.SetStateAction<T>], void>,
   reducer: (x: T, action: A) => T
 ): (action: A) => void {
   const setValue = useSetAtom(atom)

diff --git a/Eplant/views/PublicationViewer/GeneRIFs.tsx b/Eplant/views/PublicationViewer/GeneRIFs.tsx
@@ -4,6 +4,7 @@ import * as React from 'react'
 import { SearchBar } from './SearchBar'
 import { GeneRIFsData } from './types'
 
+
 const columns: GridColDef[] = [
   {
     field: 'annotation',
@@ -16,7 +17,7 @@ const columns: GridColDef[] = [
     headerName: 'Link',
     width: 130,
     headerClassName: 'select-none',
-    renderCell: (params: GridRenderCellParams<string>) => (
+    renderCell: (params: GridRenderCellParams<{[key:string]: unknown}>) => (
       <Button
         href={params.value}
         variant="outlined"

diff --git a/Eplant/views/PublicationViewer/Publications.tsx b/Eplant/views/PublicationViewer/Publications.tsx
@@ -34,7 +34,7 @@ const columns: GridColDef[] = [
     headerName: 'Link',
     width: 130,
     headerClassName: 'select-none',
-    renderCell: (params: GridRenderCellParams<string>) => (
+    renderCell: (params: GridRenderCellParams<{[key:string]: unknown}>) => (
       <>
         <a
           href={params.value}

diff --git a/jest.config.js → jest.config.cjs b/jest.config.js → jest.config.cjs
@@ -15,6 +15,5 @@ module.exports = {
   },
   moduleNameMapper: {
     '^@eplant/(.*)$': path.resolve(__dirname, 'Eplant/$1'),
-    '^@stories/(.*)$': path.resolve(__dirname, 'stories/$1'),
   },
 }