build based on a70f6f4

dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.10.3","generation_timestamp":"2024-05-23T12:58:09","documenter_version":"1.4.0"}}
+{"documenter":{"julia_version":"1.10.3","generation_timestamp":"2024-05-23T13:41:17","documenter_version":"1.4.0"}}

dev/documentation/index.html

@@ -3424,4 +3424,4 @@
 var viewer = $3Dmol.viewers['3dmol_viewer_2'];
 viewer.render();
 });
-</script><p>See the <a href="http://nbviewer.jupyter.org/github/jgreener64/Bio3DView.jl/blob/master/examples/tutorial.ipynb">Bio3DView.jl tutorial</a> for more information. <a href="https://github.com/BioJulia/BioMakie.jl">BioMakie.jl</a> can also be used to visualise BioStructures objects.</p><h2 id="Related-software"><a class="docs-heading-anchor" href="#Related-software">Related software</a><a id="Related-software-1"></a><a class="docs-heading-anchor-permalink" href="#Related-software" title="Permalink"></a></h2><p>Other packages in the Julia ecosystem that deal with structural bioinformatics or related fields include:</p><ul><li><a href="https://github.com/diegozea/MIToS.jl">MIToS.jl</a> - protein sequence and structure analysis.</li><li><a href="https://github.com/m3g/PDBTools.jl">PDBTools.jl</a> - read and write PDB files.</li><li><a href="https://github.com/christophfeinauer/PdbTool.jl">PdbTool.jl</a> - read and work with PDB files.</li><li><a href="https://github.com/chemfiles/Chemfiles.jl">Chemfiles.jl</a> - read and write various chemistry trajectory files.</li><li><a href="https://github.com/jgreener64/Bio3DView.jl">Bio3DView.jl</a> - view molecular structures (see <a href="#Visualising-structures">Visualising structures</a>).</li><li><a href="https://github.com/BioJulia/BioMakie.jl">BioMakie.jl</a> - view molecular structures and sequence alignments.</li><li><a href="https://github.com/m3g/ProteinSecondaryStructures.jl">ProteinSecondaryStructures.jl</a> - parses DSSP and STRIDE outputs.</li><li><a href="https://github.com/BioJulia/MMTF.jl">MMTF.jl</a> - read and write MMTF files. BioStructures.jl builds on top of MMTF.jl.</li><li><a href="https://github.com/jgreener64/ProteinEnsembles.jl">ProteinEnsembles.jl</a> - model ensembles of protein structures.</li><li><a href="https://github.com/jgreener64/Molly.jl">Molly.jl</a> - molecular dynamics of biomolecules.</li></ul></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Home</a><a class="docs-footer-nextpage" href="../examples/">Examples »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.0 on <span class="colophon-date" title="Thursday 23 May 2024 12:58">Thursday 23 May 2024</span>. Using Julia version 1.10.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+</script><p>See the <a href="http://nbviewer.jupyter.org/github/jgreener64/Bio3DView.jl/blob/master/examples/tutorial.ipynb">Bio3DView.jl tutorial</a> for more information. <a href="https://github.com/BioJulia/BioMakie.jl">BioMakie.jl</a> can also be used to visualise BioStructures objects.</p><h2 id="Related-software"><a class="docs-heading-anchor" href="#Related-software">Related software</a><a id="Related-software-1"></a><a class="docs-heading-anchor-permalink" href="#Related-software" title="Permalink"></a></h2><p>Other packages in the Julia ecosystem that deal with structural bioinformatics or related fields include:</p><ul><li><a href="https://github.com/diegozea/MIToS.jl">MIToS.jl</a> - protein sequence and structure analysis.</li><li><a href="https://github.com/m3g/PDBTools.jl">PDBTools.jl</a> - read and write PDB files.</li><li><a href="https://github.com/christophfeinauer/PdbTool.jl">PdbTool.jl</a> - read and work with PDB files.</li><li><a href="https://github.com/chemfiles/Chemfiles.jl">Chemfiles.jl</a> - read and write various chemistry trajectory files.</li><li><a href="https://github.com/jgreener64/Bio3DView.jl">Bio3DView.jl</a> - view molecular structures (see <a href="#Visualising-structures">Visualising structures</a>).</li><li><a href="https://github.com/BioJulia/BioMakie.jl">BioMakie.jl</a> - view molecular structures and sequence alignments.</li><li><a href="https://github.com/m3g/ProteinSecondaryStructures.jl">ProteinSecondaryStructures.jl</a> - parses DSSP and STRIDE outputs.</li><li><a href="https://github.com/BioJulia/MMTF.jl">MMTF.jl</a> - read and write MMTF files. BioStructures.jl builds on top of MMTF.jl.</li><li><a href="https://github.com/jgreener64/ProteinEnsembles.jl">ProteinEnsembles.jl</a> - model ensembles of protein structures.</li><li><a href="https://github.com/jgreener64/Molly.jl">Molly.jl</a> - molecular dynamics of biomolecules.</li></ul></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Home</a><a class="docs-footer-nextpage" href="../examples/">Examples »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.0 on <span class="colophon-date" title="Thursday 23 May 2024 13:41">Thursday 23 May 2024</span>. Using Julia version 1.10.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/examples/index.html

@@ -73,4 +73,4 @@
 describe(df) # Show summary
 mean(df.tempfactor) # Column-wise operations
 sort(df, :x) # Sorting
-CSV.write(&quot;1ALW.csv&quot;, df) # CSV file writing</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../documentation/">« Documentation</a><a class="docs-footer-nextpage" href="../api/">API »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.0 on <span class="colophon-date" title="Thursday 23 May 2024 12:58">Thursday 23 May 2024</span>. Using Julia version 1.10.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+CSV.write(&quot;1ALW.csv&quot;, df) # CSV file writing</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../documentation/">« Documentation</a><a class="docs-footer-nextpage" href="../api/">API »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.0 on <span class="colophon-date" title="Thursday 23 May 2024 13:41">Thursday 23 May 2024</span>. Using Julia version 1.10.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>