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Converge SAM and BAM records #25

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jakobnissen opened this issue Jul 28, 2020 · 3 comments
Open

Converge SAM and BAM records #25

jakobnissen opened this issue Jul 28, 2020 · 3 comments

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@jakobnissen
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  • Make SAM and BAM records display similarly
    A SAM and BAM record contain basically the same information. So they should be displayed similarly in the REPL.

  • Create SAM-to-BAM conversion functions
    This is a little harder, but probably worthwhile.

@CiaranOMara
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Make SAM and BAM records display similarly

v0.3: https://github.com/BioJulia/XAM.jl/projects/4#card-42678826

Create SAM-to-BAM conversion functions

v0.4: https://github.com/BioJulia/XAM.jl/projects/5#card-42678624

@CiaranOMara
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A SAM and BAM record contain basically the same information. So they should be displayed similarly in the REPL.

As a starting point what about displaying the underlined words in uppercase as listed in section 4.2 of https://samtools.github.io/hts-specs/SAMv1.pdf ?

@jakobnissen
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That's a good idea.

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