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Version control is not a social network
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Version control is not a social network
208 followers · 5 following

Achievements

Achievement: Pair Extraordinairex3Achievement: Public SponsorAchievement: YOLOAchievement: Pull Sharkx3Achievement: Starstruckx2Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex3Achievement: Public SponsorAchievement: YOLOAchievement: Pull Sharkx3Achievement: Starstruckx2Achievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@BioJulia @RasmussenLab

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jakobnissen/README.md

Welcome to my GitHub page

I'm Jakob, a biologist-turned-programmer, happy in my role as a research software engineer.

I work as an assistant professor at CPR, Copenhagen University researching metagenomics with particular interest in virus- and plasmid metagenomics. Biologically, my interests are in phylogenetics, molecular evolution and sub-genomic replicons. On the computer science side, I'm a Julia, Rust and Python enthusiast, contributing to BioJulia and Julia. I particularly enjoy writing optimized and generic software packages for bioinformatics.

Highlighted work:

Selected repositories

Repositories I maintain

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  1. RasmussenLab/vamb RasmussenLab/vamb Public

    Variational autoencoder for metagenomic binning

    Python 254 45

  2. hardware_introduction hardware_introduction Public

    What scientific programmers must know about CPUs and RAM to write fast code.

    Julia 431 36

  3. alen alen Public

    Simple terminal alignment viewer

    Rust 78 5

  4. ScanByte.jl ScanByte.jl Public

    Find your bytes. Fast.

    Julia 25

  5. StackCollections.jl StackCollections.jl Public

    Fixed-bit collections in Julia

    Julia 14 1

  6. ErrorTypes.jl ErrorTypes.jl Public

    Rust-like error types in Julia

    Julia 49 2