Merge pull request #792 from BioSchemas/non-schema-props

Bioschemas property web pages to prevent 404 errors on profiles

404.html

@@ -3,8 +3,10 @@
 ---
 <h1>Page not found</h1>
 
-<p>It seems that you are trying to get to a page that does not exist. Please use the naviation bar above to navigate around the site. Some pages that you may be interest in are:</p>
+<p>It seems that you are trying to get to a page that does not exist. Please use the naviation bar above to navigate
+  around the site. Some pages that you may be interest in are:</p>
 <ul>
   <li><a href="/profiles">List of profiles</a></li>
   <li><a href="/types">List of types</a></li>
-</ul>
+  <li><a href="/properties">List of properties</a></li>
+</ul>

_config.yml

@@ -6,8 +6,7 @@ description: > # this means to ignore newlines until "baseurl:"
   standards and reach consensus among a wide number of life sciences organizations and communities.
 url: "http://bioschemas.org" # the base hostname & protocol for your site
 twitter_username: Bioschemas
-github_username:  Bioschemas
-
+github_username: Bioschemas
 
 # Build settings
 markdown: kramdown
@@ -16,14 +15,17 @@ sass:
   style: compressed
 highlighter: rouge
 plugins:
- - jekyll-redirect-from
- - jekyll-sitemap
- - jekyll-gist
- - jekyll-relative-links
+  - jekyll-redirect-from
+  - jekyll-sitemap
+  - jekyll-gist
+  - jekyll-relative-links
 
 # Collections
 collections_dir: pages
 collections:
+  properties:
+    output: true
+    permalink: /:collection/:path
   types:
     output: true
     permalink: /:collection/:path
@@ -63,8 +65,7 @@ collections:
 
 # Defaults
 defaults:
-  -
-    scope:
+  - scope:
       path: "pages"
       type: "pages"
     values:
@@ -75,6 +76,11 @@ defaults:
       type: "types"
     values:
       layout: "default"
+  - scope:
+      path: ""
+      type: "properties"
+    values:
+      layout: "default"
   - scope:
       path: ""
       type: "profiles"

_includes/navbar.html

@@ -54,7 +54,8 @@
                 resources</a></li>
             <li><a class="dropdown-item" href="{{ '/tutorials/community/rd' | relative_url }}">Adding markup to Rare
                 Disease resources</a></li>
-            <li><a class="dropdown-item" href="{{ '/tutorials/community/biodiversity' | relative_url }}">Adding markup to Biodiversity-related resources</a></li>
+            <li><a class="dropdown-item" href="{{ '/tutorials/community/biodiversity' | relative_url }}">Adding markup
+                to Biodiversity-related resources</a></li>
           </ul>
         </li>
         <li class="nav-item dropdown">
@@ -63,6 +64,7 @@
           <ul class="dropdown-menu" aria-labelledby="btnCommunity">
             <li><a class="dropdown-item" href="{{ '/profiles/' | relative_url }}">Profiles</a></li>
             <li><a class="dropdown-item" href="{{ '/types/' | relative_url }}">Types</a></li>
+            <li><a class="dropdown-item" href="{{ '/properties/' | relative_url }}">Properties</a></li>
           </ul>
         </li>
         <li class="nav-item dropdown">

_includes/properties.html

@@ -0,0 +1,42 @@
+<h2>{{page.prop_name}}</h2>
+<em>A Bioschemas property</em>
+
+<h3></h3>
+<p>
+  {{page.description}}
+</p>
+
+{% if page.expected_values_as_type or page.expected_values_as_data %}
+<h4>Expected values</h4>
+<ul>
+  {% for v in page.expected_values_as_type %}
+  {%- assign typeName = '/types/' | append: v %}
+  <li><a href="{{ typeName | relative_url }}">{{ v }}</a></li>
+  {% endfor %}
+  {% for v in page.expected_values_as_data %}
+  <li>
+    {{v}}
+  </li>
+  {% endfor %}
+</ul>
+{% endif %}
+
+{% if page.used_in_profiles %}
+<h4>Used on these profiles</h4>
+<ul>
+  {% for v in page.used_in_profiles %}
+  {%- assign profileName = '/profiles/' | append: v %}
+  <li><a href="{{ profileName | relative_url }}">{{ v }}</a></li>
+  {% endfor %}
+</ul>
+{% endif %}
+
+{% if page.used_in_types %}
+<h4>Used on these types</h4>
+<ul>
+  {% for v in page.used_in_types %}
+  {%- assign typeName = '/types/' | append: v %}
+  <li><a href="{{ typeName | relative_url }}">{{ v }}</a></li>
+  {% endfor %}
+</ul>
+{% endif %}

_includes/specification-table.html

@@ -64,7 +64,8 @@ <h5 class="modal-title" id="exampleModalLabel">Examples for all properties</h5>
         {%- for prop in props_list %}
         <tr>
             {%- if prop.type == "bioschemas" %}
-            <td class="property-column"><a href="{{prop.type_url }}" target="_blank" class="bioschema">{{prop.property}}</a></td>
+            {% capture url %}/properties/{{ prop.property }}{% endcapture %}
+            <td class="property-column"><a href={{ url | relative_url }} target="_blank" class="bioschema">{{prop.property}}</a></td>
             {%- elsif prop.type == "schemas.org" or prop.type == "" %}
             <td class="property-column"><a href="http://schema.org/{{prop.property}}" target="_blank" class="schemaorg">{{prop.property}}</a></td>
             {%- elsif prop.type == "pending" %}

pages/_properties/index.html

@@ -0,0 +1,30 @@
+---
+layout: default
+title: Bioschemas Properties
+# redirect_from:
+# - "/devTypes/"
+# - "/types/drafts/"
+
+---
+<h1>Bioschemas Properties
+    <a target="_blank" href="mailto:[email protected]?subject=[Bioschemas] request to create a new property"
+        class="btn btn-primary btn-sm float-end" role="button">
+        Propose a new property</a>
+</h1>
+
+<p><a href="https://schema.org/">Schema.org</a> provides a vocabulary of terms that can be used to describe data on the
+    Internet. The Bioschemas community is extending this vocabulary to be able to describe life sciences resources.</p>
+
+<p>Comments and discussions on the <a href="https://lists.w3.org/Archives/Public/public-bioschemas/"
+        itemprop="email">mailing list</a> or <a href="https://github.com/Bioschemas/specifications/issues">GitHub issue
+        tracker</a> are encouraged.</p>
+<br />
+
+<ul>
+    {% for prop in site.properties %}
+    {% if prop.prop_name %}
+    {%- assign propName = '/properties/' | append: prop.prop_name %}
+    <li><a href="{{ propName | relative_url }}">{{ prop.prop_name }}</a></li>
+    {% endif %}
+    {% endfor %}
+</ul>

pages/_properties/input.html

@@ -0,0 +1,20 @@
+---
+dateModified: 2023-10-06
+prop_name: input
+description: a property aimed at specifying the type of consumed data.
+
+expected_values_as_type :
+- FormalParameter
+
+# expected_values_as_data :
+# - text
+
+# used_in_types:
+# -
+
+used_in_profiles:
+- ComputationalTool
+- ComputationalWorkflow
+---
+
+{% include properties.html %}

pages/_properties/output.html

@@ -0,0 +1,20 @@
+---
+dateModified: 2023-10-06
+prop_name: output
+description: a property aimed at specifying the type of produced data.
+
+expected_values_as_type :
+- FormalParameter
+
+# expected_values_as_data :
+# - text
+
+# used_in_types:
+# -
+
+used_in_profiles:
+- ComputationalTool
+- ComputationalWorkflow
+---
+
+{% include properties.html %}