Skip to content

Commit

Permalink
Deploying to gh-pages from @ f804568 🚀
Browse files Browse the repository at this point in the history
  • Loading branch information
jkanche committed Sep 21, 2023
1 parent 82381f5 commit dfc5f4e
Show file tree
Hide file tree
Showing 21 changed files with 366 additions and 314 deletions.
2 changes: 1 addition & 1 deletion .buildinfo
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: df0688cddee9091d912f354361682e80
config: 6d2d40649fbf85e077e1288bf76b90f4
tags: 645f666f9bcd5a90fca523b33c5a78b7
8 changes: 4 additions & 4 deletions _modules/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" />

<!-- Generated with Sphinx 7.2.6 and Furo 2023.09.10 -->
<title>Overview: module code - SingleCellExperiment 0.3.2 documentation</title>
<title>Overview: module code - SingleCellExperiment 0.3.3 documentation</title>
<link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../_static/styles/furo.css?v=135e06be" />
<link rel="stylesheet" type="text/css" href="../_static/styles/furo-extensions.css?v=36a5483c" />
Expand Down Expand Up @@ -122,7 +122,7 @@
</label>
</div>
<div class="header-center">
<a href="../index.html"><div class="brand">SingleCellExperiment 0.3.2 documentation</div></a>
<a href="../index.html"><div class="brand">SingleCellExperiment 0.3.3 documentation</div></a>
</div>
<div class="header-right">
<div class="theme-toggle-container theme-toggle-header">
Expand All @@ -145,7 +145,7 @@
<div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">


<span class="sidebar-brand-text">SingleCellExperiment 0.3.2 documentation</span>
<span class="sidebar-brand-text">SingleCellExperiment 0.3.3 documentation</span>

</a><form class="sidebar-search-container" method="get" action="../search.html" role="search">
<input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
Expand Down Expand Up @@ -241,7 +241,7 @@ <h1>All modules for which code is available</h1>

</aside>
</div>
</div><script src="../_static/documentation_options.js?v=71d9d8e6"></script>
</div><script src="../_static/documentation_options.js?v=d5a15cff"></script>
<script src="../_static/doctools.js?v=888ff710"></script>
<script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../_static/scripts/furo.js?v=32e29ea5"></script>
Expand Down
376 changes: 214 additions & 162 deletions _modules/singlecellexperiment/SingleCellExperiment.html

Large diffs are not rendered by default.

15 changes: 10 additions & 5 deletions _modules/singlecellexperiment/io/anndata.html
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../../genindex.html" /><link rel="search" title="Search" href="../../../search.html" />

<!-- Generated with Sphinx 7.2.6 and Furo 2023.09.10 -->
<title>singlecellexperiment.io.anndata - SingleCellExperiment 0.3.2 documentation</title>
<title>singlecellexperiment.io.anndata - SingleCellExperiment 0.3.3 documentation</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../../../_static/styles/furo.css?v=135e06be" />
<link rel="stylesheet" type="text/css" href="../../../_static/styles/furo-extensions.css?v=36a5483c" />
Expand Down Expand Up @@ -122,7 +122,7 @@
</label>
</div>
<div class="header-center">
<a href="../../../index.html"><div class="brand">SingleCellExperiment 0.3.2 documentation</div></a>
<a href="../../../index.html"><div class="brand">SingleCellExperiment 0.3.3 documentation</div></a>
</div>
<div class="header-right">
<div class="theme-toggle-container theme-toggle-header">
Expand All @@ -145,7 +145,7 @@
<div class="sidebar-sticky"><a class="sidebar-brand" href="../../../index.html">


<span class="sidebar-brand-text">SingleCellExperiment 0.3.2 documentation</span>
<span class="sidebar-brand-text">SingleCellExperiment 0.3.3 documentation</span>

</a><form class="sidebar-search-container" method="get" action="../../../search.html" role="search">
<input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
Expand Down Expand Up @@ -212,6 +212,11 @@ <h1>Source code for singlecellexperiment.io.anndata</h1><div class="highlight"><

<span class="kn">from</span> <span class="nn">..SingleCellExperiment</span> <span class="kn">import</span> <span class="n">SingleCellExperiment</span>

<span class="k">try</span><span class="p">:</span>
<span class="kn">from</span> <span class="nn">anndata</span> <span class="kn">import</span> <span class="n">AnnData</span>
<span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
<span class="k">pass</span>

<span class="n">__author__</span> <span class="o">=</span> <span class="s2">&quot;jkanche&quot;</span>
<span class="n">__copyright__</span> <span class="o">=</span> <span class="s2">&quot;jkanche&quot;</span>
<span class="n">__license__</span> <span class="o">=</span> <span class="s2">&quot;MIT&quot;</span>
Expand All @@ -231,7 +236,7 @@ <h1>Source code for singlecellexperiment.io.anndata</h1><div class="highlight"><

<div class="viewcode-block" id="from_anndata">
<a class="viewcode-back" href="../../../api/singlecellexperiment.io.html#singlecellexperiment.io.anndata.from_anndata">[docs]</a>
<span class="k">def</span> <span class="nf">from_anndata</span><span class="p">(</span><span class="n">adata</span><span class="p">:</span> <span class="s2">&quot;AnnData&quot;</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">SingleCellExperiment</span><span class="p">:</span>
<span class="k">def</span> <span class="nf">from_anndata</span><span class="p">(</span><span class="n">adata</span><span class="p">:</span> <span class="n">AnnData</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">SingleCellExperiment</span><span class="p">:</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;Read an :py:class:`~anndata.AnnData` into</span>
<span class="sd"> :py:class:`~singlecellexperiment.SingleCellExperiment.SingleCellExperiment`.</span>

Expand Down Expand Up @@ -314,7 +319,7 @@ <h1>Source code for singlecellexperiment.io.anndata</h1><div class="highlight"><

</aside>
</div>
</div><script src="../../../_static/documentation_options.js?v=71d9d8e6"></script>
</div><script src="../../../_static/documentation_options.js?v=d5a15cff"></script>
<script src="../../../_static/doctools.js?v=888ff710"></script>
<script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../../../_static/scripts/furo.js?v=32e29ea5"></script>
Expand Down
8 changes: 4 additions & 4 deletions _modules/singlecellexperiment/io/tenx.html
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../../genindex.html" /><link rel="search" title="Search" href="../../../search.html" />

<!-- Generated with Sphinx 7.2.6 and Furo 2023.09.10 -->
<title>singlecellexperiment.io.tenx - SingleCellExperiment 0.3.2 documentation</title>
<title>singlecellexperiment.io.tenx - SingleCellExperiment 0.3.3 documentation</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../../../_static/styles/furo.css?v=135e06be" />
<link rel="stylesheet" type="text/css" href="../../../_static/styles/furo-extensions.css?v=36a5483c" />
Expand Down Expand Up @@ -122,7 +122,7 @@
</label>
</div>
<div class="header-center">
<a href="../../../index.html"><div class="brand">SingleCellExperiment 0.3.2 documentation</div></a>
<a href="../../../index.html"><div class="brand">SingleCellExperiment 0.3.3 documentation</div></a>
</div>
<div class="header-right">
<div class="theme-toggle-container theme-toggle-header">
Expand All @@ -145,7 +145,7 @@
<div class="sidebar-sticky"><a class="sidebar-brand" href="../../../index.html">


<span class="sidebar-brand-text">SingleCellExperiment 0.3.2 documentation</span>
<span class="sidebar-brand-text">SingleCellExperiment 0.3.3 documentation</span>

</a><form class="sidebar-search-container" method="get" action="../../../search.html" role="search">
<input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
Expand Down Expand Up @@ -352,7 +352,7 @@ <h1>Source code for singlecellexperiment.io.tenx</h1><div class="highlight"><pre

</aside>
</div>
</div><script src="../../../_static/documentation_options.js?v=71d9d8e6"></script>
</div><script src="../../../_static/documentation_options.js?v=d5a15cff"></script>
<script src="../../../_static/doctools.js?v=888ff710"></script>
<script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../../../_static/scripts/furo.js?v=32e29ea5"></script>
Expand Down
2 changes: 1 addition & 1 deletion _static/documentation_options.js
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
const DOCUMENTATION_OPTIONS = {
VERSION: '0.3.2',
VERSION: '0.3.3',
LANGUAGE: 'en',
COLLAPSE_INDEX: false,
BUILDER: 'html',
Expand Down
9 changes: 5 additions & 4 deletions api/modules.html
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
<link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /><link rel="next" title="singlecellexperiment package" href="singlecellexperiment.html" /><link rel="prev" title="Tutorial" href="../tutorial.html" />

<!-- Generated with Sphinx 7.2.6 and Furo 2023.09.10 -->
<title>singlecellexperiment - SingleCellExperiment 0.3.2 documentation</title>
<title>singlecellexperiment - SingleCellExperiment 0.3.3 documentation</title>
<link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../_static/styles/furo.css?v=135e06be" />
<link rel="stylesheet" type="text/css" href="../_static/styles/furo-extensions.css?v=36a5483c" />
Expand Down Expand Up @@ -123,7 +123,7 @@
</label>
</div>
<div class="header-center">
<a href="../index.html"><div class="brand">SingleCellExperiment 0.3.2 documentation</div></a>
<a href="../index.html"><div class="brand">SingleCellExperiment 0.3.3 documentation</div></a>
</div>
<div class="header-right">
<div class="theme-toggle-container theme-toggle-header">
Expand All @@ -146,7 +146,7 @@
<div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">


<span class="sidebar-brand-text">SingleCellExperiment 0.3.2 documentation</span>
<span class="sidebar-brand-text">SingleCellExperiment 0.3.3 documentation</span>

</a><form class="sidebar-search-container" method="get" action="../search.html" role="search">
<input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
Expand Down Expand Up @@ -226,6 +226,7 @@ <h1>singlecellexperiment<a class="headerlink" href="#singlecellexperiment" title
<li class="toctree-l2"><a class="reference internal" href="singlecellexperiment.html#module-singlecellexperiment.SingleCellExperiment">singlecellexperiment.SingleCellExperiment module</a><ul>
<li class="toctree-l3"><a class="reference internal" href="singlecellexperiment.html#singlecellexperiment.SingleCellExperiment.SingleCellExperiment"><code class="docutils literal notranslate"><span class="pre">SingleCellExperiment</span></code></a><ul>
<li class="toctree-l4"><a class="reference internal" href="singlecellexperiment.html#singlecellexperiment.SingleCellExperiment.SingleCellExperiment.assays"><code class="docutils literal notranslate"><span class="pre">SingleCellExperiment.assays</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="singlecellexperiment.html#singlecellexperiment.SingleCellExperiment.SingleCellExperiment.row_ranges"><code class="docutils literal notranslate"><span class="pre">SingleCellExperiment.row_ranges</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="singlecellexperiment.html#singlecellexperiment.SingleCellExperiment.SingleCellExperiment.row_data"><code class="docutils literal notranslate"><span class="pre">SingleCellExperiment.row_data</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="singlecellexperiment.html#singlecellexperiment.SingleCellExperiment.SingleCellExperiment.col_data"><code class="docutils literal notranslate"><span class="pre">SingleCellExperiment.col_data</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="singlecellexperiment.html#singlecellexperiment.SingleCellExperiment.SingleCellExperiment.metadata"><code class="docutils literal notranslate"><span class="pre">SingleCellExperiment.metadata</span></code></a></li>
Expand Down Expand Up @@ -307,7 +308,7 @@ <h1>singlecellexperiment<a class="headerlink" href="#singlecellexperiment" title

</aside>
</div>
</div><script src="../_static/documentation_options.js?v=71d9d8e6"></script>
</div><script src="../_static/documentation_options.js?v=d5a15cff"></script>
<script src="../_static/doctools.js?v=888ff710"></script>
<script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../_static/scripts/furo.js?v=32e29ea5"></script>
Expand Down
Loading

0 comments on commit dfc5f4e

Please sign in to comment.