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add SE-inspired figure
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jkanche committed Jul 2, 2024
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2 changes: 2 additions & 0 deletions README.md
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Expand Up @@ -35,6 +35,8 @@ The TileDB matrix file is stored in a **cell X gene** orientation. This orientat
is chosen because the fastest-changing dimension as new files are added to the
collection is usually the cells rather than genes.

![`CellArrDataset` structure](./assets/cellarr.png "CellArrDataset")

***Note: Currently only supports either paths to H5AD or `AnnData` objects***

To build a `CellArrDataset` from a collection of `H5AD` or `AnnData` objects:
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2 changes: 2 additions & 0 deletions docs/tutorial.md
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Expand Up @@ -58,6 +58,8 @@ some genes are unmeasured or ordered differently in the original experiments.
Check out the [reference](https://biocpy.github.io/cellarr/api/cellarr#module-cellarr.build_cellarrdataset) documentation for modifying the parameters for any of these steps.
:::

![`CellArrDataset` structure](./assets/cellarr.png "CellArrDataset")

First lets mock a few `AnnData` objects:

```{code-cell}
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