GALILEO Deployment

List of latest packages deployed

• neurodamus-hippocampus/1.8-2.15.0-2.7.0
• neurodamus-neocortex/1.11-2.15.0-2.7.0
• py-neurodamus/2.15.0
• neuron/9.0.a15
• py-bluepyopt/1.14.4
• py-matplotlib/3.7.3

Instructions for Using Software Stack

• Run a simulation with neurodamus

#!/bin/bash -l
#SBATCH --job-name=neurodamus_test
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=36
#SBATCH -A icei_H_Ebrait
#SBATCH --time=00:30:00
#SBATCH -p g100_usr_prod

module purge
module load gcc/10.2.0
module load intel/oneapi-2022--binary intelmpi/oneapi-2022--binary
module load python/3.8.12--intel--2021.4.0

module use /g100_work/icei_H_Ebrait/software-deployment/HBP/22-05-2023/modules/linux-centos8-cascadelake/

# Load neurodamus
module load neurodamus-hippocampus/1.8-2.15.0-2.7.0 py-neurodamus/2.15.0

srun special -mpi -python $NEURODAMUS_PYTHON/init.py 

• Using py-bluepy or BluePyOpt

module purge
module load gcc/10.2.0
module load intel/oneapi-2022--binary intelmpi/oneapi-2022--binary
module load python/3.8.12--intel--2021.4.0

module use /g100_work/icei_H_Ebrait/software-deployment/HBP/08-02-2024/modules/linux-centos8-cascadelake/

# Load bluepyopt
module load neuron
module load py-bluepyopt py-matplotlib

$ python
>>> import bluepyopt