Skip to content

Issues: BoevaLab/FREEC

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

88 Open 48 Closed
88 Open 48 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Interpreting the results
#153 opened Oct 15, 2024 by MaryGoAround
Regions missing from ratio file
#152 opened Sep 27, 2024 by BhumikaPriyadarshini
FREEC segfaulting at "annotate copy numbers": cannot create std::vector larger than max_size()
#151 opened Sep 24, 2024 by dmgie
Segmentation fault after samtools or sambamba read the BAM file
#149 opened Aug 15, 2024 by Calhs
2
get the float copy number values
#148 opened Jul 19, 2024 by hushuzuiniu
2
What is the meaning of suclonal information in the _ratio.txt file
#147 opened Jul 18, 2024 by kmavrommatis
1
Understanding _ratio.txt and _BAF.txt for counting informative markers
#146 opened Jul 18, 2024 by kmavrommatis
1
questions about ratio.txt
#145 opened Jul 16, 2024 by ZYongQi
3
error in running gccount
#143 opened Apr 28, 2024 by DeMagicscience
1
Some settings for WGS explaind in manual are not included in provided config file for WGS.
#142 opened Mar 22, 2024 by monagai
missing p values in assess_significance.R
#141 opened Mar 13, 2024 by s-juross
questions about the output
#140 opened Jan 25, 2024 by ZYongQi
7
freec can't extract reads from bam file
#137 opened Dec 13, 2023 by ZYongQi
1
All zero reads with segfault
#135 opened Sep 6, 2023 by dgodin19
1
Somatic cnv issue
#134 opened Aug 9, 2023 by awast
Problem making plots
#133 opened Jul 27, 2023 by Gon1976
2
Error: to calculate BAF values
#130 opened May 25, 2023 by ghost
2
failed to run segmentation on chr*
#129 opened Apr 26, 2023 by ngualand
run with multiple control files
#128 opened Apr 14, 2023 by lmanchon
2
Questions about the output of CNVs and the use of assess_significance
#127 opened Mar 17, 2023 by stbio-hbh
3
Question about the output of freec2bed.pl
#125 opened Mar 7, 2023 by taoziyu97
ERROR : Unable to open fasta file for chr22 (mm10 | WGS)
#124 opened Jan 19, 2023 by Matheo-Lode
4
ERROR: there was a problem in the initial guess of the polynomial
#123 opened Jan 10, 2023 by KamilMaliszArdigen
8
The problem of FREEC_ratio2Absolute.R
#122 opened Dec 30, 2022 by xiasijian
3
running Control-FREEC on multiple tumor/normal paired samples
#121 opened Dec 24, 2022 by awast
3
ProTip! What’s not been updated in a month: updated:<2024-09-22.