SpInOpt-MMD

This folder contains all the code to reproduce the experiments from our submission.

Copyright

• The code in the jitkrittum folder is the original source code from Jitkrittum et al..
• The code in the src folder is closely modeled on Jitkrittum et al., but it has been refactored and extended for SpInOpt-MMD.
• The experiments in the experiments folder are closely modeled on the experimental setting of Jitkrittum et al. for best comparability.

Therefore, we include the original license and copyright statement in the jitkrittum folder (LICENSE_interpretable-test.txt).
Please note that this copyright applies to all parts on the code which are taken from Jitkrittum et al.

Data

All data used in this analysis was obtained from public repositories (that may require registration for their access). These include:

Benchmark data sets:

• Karolinska faces data
• NIPS Paper dataset

Biological data sets

• ADNI data: MR images obtained from https://adni.loni.usc.edu/ - check this publication for details regarding patient selection and data preprocessing
• PBMC data: data were obtained from 10X Genomics - check this publication for details regarding data preprocessing.
• DRIAMS data: data were obtained from the Dryad repository - check this publication for details regarding data preprocessing for the two selected examples
• TCGA LGG whole genome sequencing data (ATRX mutation status) were obtained from https://portal.gdc.cancer.gov/
• TCGA-LGG MR images were obtained from The Cancer Imaging Archive