Releases: BramDevlaminck/FastPeptideMatching
Releases · BramDevlaminck/FastPeptideMatching
SA search testing
Filter away empty functional annotation string in search result
Merge pull request #24 from BramDevlaminck/empty_annotation_filter filter away empty annotation string
Cargo dependency cleanup
This release does not introduce any features.
Only the dependencies of the suffix array are cleaned up.
Suffix array peptide matching
Fast, memory efficient peptide matching with suffix arrays
Ukkonen with NULL value represented by usize::MAX
- Added some tests
- use a
lib.rs
file - Rewrite the use of
<Option<usize>>
to use a type alias ofusize
with a NULL value trait
Ukkonen with option type
- Working implementation of Ukkonen (or at least it should work)
- All values that are possibly null are wrapped inside an Option => this has a lot of memory overhead (Option = 16 byte while usize is 8 byte big)