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1. RNAseq-variant-calling-nf RNAseq-variant-calling-nf Public

   A Nextflow workflow to call variants with GATK from bulk RNAseq data

   Nextflow

2. SingleCellGarage SingleCellGarage Public

   My R package of utilities for working with single cell data

   R

3. py_tools py_tools Public

   Collection of in progress scripts for genomics with python

   Python 3

4. star-rsem-scrnaseq-nf star-rsem-scrnaseq-nf Public

   Run STAR and RSEM on scRNAseq data demultiplexed by cell barcode

   Nextflow

5. cellranger-nf cellranger-nf Public

   A Nextflow wrapper for 10X Cellranger to wrangle the 10,000+ output files per sample

   Nextflow 2