celigo_pipeline_automation_paper

Contains tools for the celigo pipeline

celigo_pipeline_automation_paper==1.0.0

Installation

Documentation

For full package documentation please visit BrianWhitneyAI.github.io/celigo_pipeline_automation_paper.

Development

See CONTRIBUTING.md for information related to developing the code.

The Commands You Need To Know

System Requirements

 - Systems
 - Tested on 

Installation Guide

2. Cellprofiler Setup

3. Ilastik Setup

4. Template Configuration

5. Package Installment

   make install

   This will setup a virtual environment local to this project and install all of the project's dependencies into it. The virtual env will be located in celigo_pipeline_automation_paper/venv.

Demos