GitHub Actions for nbconvert #44

	on: [workflow_dispatch]

	name: GitHub Actions for nbconvert
	jobs:
	nbconvert:
	runs-on: ubuntu-latest
	name: nbconvert
	steps:
	- name: checkout repo
	uses: actions/checkout@v3

	- name: deleting nbconvert branch if exists
	shell: bash
	run: \|
	git push origin -d nbconvert &>/dev/null \|\| true

	- name: extracting branch name & creating the new nbconvert branch
	shell: bash
	run: \|
	echo "GitHub reft_name ${{ github.ref_name }}"
	git checkout -b nbconvert
	git push -u origin nbconvert
	id: extract_branch
	- name: retreiving name of the article
	id: getfile
	run: \|
	FIRST_FILE=$(ls *.ipynb \| sort \| head -n 1)
	echo "article name is: $FIRST_FILE"
	echo "FIRST_IPYNB_FILE=$FIRST_FILE" >> $GITHUB_ENV
	- name: installing nbconvert & other required libraries
	run: \|
	pip install -r requirements.txt
	python -m pip install jupyter nbconvert nbformat notebook==6.4.12 spacy
	python -m spacy download en_core_web_lg
	- name: running nbconvert
	run: \|
	jupyter nbconvert --execute --to notebook --inplace --ExecutePreprocessor.timeout=-1 $FIRST_IPYNB_FILE

	- name: committing changes
	uses: stefanzweifel/git-auto-commit-action@v5
	with:
	commit_message: Automated commit
	branch: nbconvert
	create_branch: true

	- name: creating pull request
	run: gh pr create -B ${{ github.ref }} -H nbconvert --title 'Comparison between nbconvert review of the article and the main article' --body 'Created by Github action'
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

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