Merge branch 'master' of github.com:seung-lab/MaterializationEngine #815
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Materialization Engine | |
| on: | |
| push: | |
| branches: | |
| - master | |
| paths: | |
| - "materializationengine/**" | |
| - "tests/**" | |
| - "requirements.txt" | |
| - ".github/workflows/**" | |
| pull_request: | |
| branches: master | |
| jobs: | |
| test: | |
| name: Test against different Python versions | |
| runs-on: ubuntu-latest | |
| services: | |
| postgres: | |
| image: postgis/postgis:13-master | |
| env: | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: postgres | |
| POSTGRES_DB: test_aligned_volume | |
| ports: | |
| - 5432:5432 | |
| options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.9 | |
| - uses: actions/cache@v2 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/test_requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: true | |
| python-version: 3.9 | |
| - name: Install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| pip install flake8 pytest | |
| pip install -r requirements.txt | |
| if [ -f test_requirements.txt ]; then pip install -r test_requirements.txt; fi | |
| - name: Lint with flake8 | |
| shell: bash -l {0} | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| shell: bash -l {0} | |
| run: | | |
| pytest | |
| deploy: | |
| name: Tag a new version and push tag | |
| runs-on: ubuntu-latest | |
| needs: test | |
| if: github.ref == 'refs/heads/master' | |
| steps: | |
| - name: git checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| fetch-depth: 0 | |
| - name: bumpversion | |
| shell: bash -l {0} | |
| run: | | |
| git config --global user.name "github-actions" | |
| git config --global user.email "[email protected]" | |
| git remote set-url origin https://x-access-token:${{ secrets.GITHUB_TOKEN }}@github.com/$GITHUB_REPOSITORY | |
| pip install bumpversion | |
| bumpversion patch | |
| git push | |
| git push --tags | |
| TAG=$(git describe --tags) | |
| echo "tag=$TAG" >> $GITHUB_ENV |