LDlinkR 1.4.0

• Added Zenodo DOI badge in version 1.3.0.9000
• 3/1/2024 - Increased maximum allowed variants in LDmatrix to 2500
• 3/1/2024 - Added bp window size parameter to LDproxy
• 3/4/2024 - Add bp window size parameter to LDproxy_batch

LDlinkR 1.3.0

• Change LDlink Domain URL to https://ldlink.nih.gov/ (previous url root will no longer work following an unspecified amount of time).
• Add Continuous Integration using Github Actions.
• Update citation file with bibentry style

LDlinkR v1.2.3

• Submission date: 2022-12-15
• Add feature to provide root URL to API
• Fix bug that scrambled columns in LDproxy_batch when 'append' option is TRUE
• Update Roxygen version to 7.2.2

LDlinkR v1.2.2

• Submission date: 2022-08-08
• Issue #19, fix bug in LDtrait error handling of response data.
• Update CRAN downloads badge in README
• Remove link for 1000 Genomes Project in README and vignette

LDlinkR v1.2.1

• Submission date: 2022-06-06
• Fix bug in LDexpress that returned GRCh37 results when genome build was GRCh38 or GRCh38 High Coverage.
• Fix bug in LDproxy handling of error/warning messages in response data.
• Update RoxygenNote to 7.2.0

LDlinkR v1.2.0

• Submission date: 2022-05-11
• Issue #13 - Add new argument to LDhap (table_type) with four options for different types data output.
• Issue #14 - Fix LDhap valid input check for number of input 'snps', line 94.
• Update test-ldhap with additional tests
• Update vignette with new LDhap usage examples with new argument.
• Make LDhap able to write to file for both types of data returned by the new 'table_type' options.
• Add feature 'genome_build' to support different genome builds, GRCh37(hg19), GRCh38(hg38), and GRCh38 High Coverage.
• Improve/update error and warning message returned in the response data from the LDlink API server.
• Fix CRAN note about 'LazyData' by removing line from Description file.
• Update README file.
• Add testthat tests for feature genome_build
• Add three new Illumina chips to SNPchip
• Add two new Affymetrix chips to SNPchip
• Major update to vignette with new feature genome_build

Version: 1.2.0
Date: 2022-05-11 17:26:11 UTC
SHA: 9a96d6b

LDlinkR v1.1.2.9001

Updated the LDhap function with a new parameter, table_type with four options to choose the format type of the output. The four options include variant, haplotype, both and merged.

LDlinkR v1.1.2

Notified by CRAN to make corrections to comply with policy, "Packages which use Internet resources should fail gracefully with an informative message if the resource is not available or has changed (and not give a check warning nor error)." Changes were added to package to ensure compliance. Other minor changes were also included.

LDlinkR v1.1.1

This version adds three new functions, LDexpress, list_gtex_tissues, and LDtrait.
It also includes a major update to the vignette and README as well as other minor updates.
This is the 4th release.