update github workflows from CCBR/actions #6

	name: build

	on:
	push:
	branches:
	- main
	- develop
	pull_request:
	branches:
	- main
	- develop

	jobs:
	build:
	runs-on: ubuntu-latest
	timeout-minutes: 2
	strategy:
	matrix:
	python-version: ["3.11"]
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	cache: "pip"
	- name: Install nextflow
	uses: nf-core/setup-nextflow@v1
	- name: Install Python dependencies
	run: \|
	python -m pip install --upgrade pip setuptools
	pip install .[dev,test]
	- name: Check CLI flags
	run: \|
	tool_name --help
	tool_name --version
	tool_name --citation
	- name: Test
	run: \|
	python -m pytest
	- name: Stub run
	run: \|
	tool_name run -profile ci_stub,docker -stub
	- name: "Upload Artifact"
	uses: actions/upload-artifact@v3
	if: always() # run even if previous steps fail
	with:
	name: nextflow-log
	path: .nextflow.log

	build-status: # https://github.com/orgs/community/discussions/4324#discussioncomment-3477871
	runs-on: ubuntu-latest
	needs: [build]
	if: always()
	steps:
	- name: Successful build
	if: ${{ !(contains(needs.*.result, 'failure')) }}
	run: exit 0
	- name: Failing build
	if: ${{ contains(needs.*.result, 'failure') }}
	run: exit 1

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