v0.5.5

• STAR2p output per gene counts and these per sample counts are aggregated into 3 count matrices:
  • stranded
  • unstranded
  • reverse stranded
• config.yaml now includes 3 resource paths:
  • original: hg38(masked) + rRNA + ERCC + legacy virus set from Mahesh
  • v2: original + HSV1 strain 17
  • v3: original + HSV1 KOS strain (with only 1 copy of repeats) --> this is now the new default