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docs: fix relative links
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kelly-sovacool committed Sep 20, 2024
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6 changes: 3 additions & 3 deletions README.md
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Expand Up @@ -42,10 +42,10 @@ crispin run --mode slurm -profile test,biowulf

To run CRISPIN on your own data, you'll need to create a sample sheet.
Take a look at the example:
[assets/samplesheet_test_biowulf.csv](assets/samplesheet_test_biowulf.csv).
[assets/samplesheet_test_biowulf.csv](https://github.com/CCBR/CRISPIN/tree/main/assets/samplesheet_test_biowulf.csv).

You'll also need to select an appropriate library for your dataset.
CRISPIN is bundled with several libraries in [assets/lib](assets/lib),
CRISPIN is bundled with several libraries in [assets/lib](https://github.com/CCBR/CRISPIN/tree/main/assets/lib),
or you can download your own.
Once you've created a samplesheet with paths to your fastq files,
run crispin with the `--input` option to specify the path to your sample sheet
Expand All @@ -61,7 +61,7 @@ Come across a **bug**? Open an [issue](https://github.com/CCBR/CRISPIN/issues) a

Have a **question**? Ask it in [discussions](https://github.com/CCBR/CRISPIN/discussions).

Want to **contribute** to this project? Check out the [contributing guidelines](docs/CONTRIBUTING.md).
Want to **contribute** to this project? Check out the [contributing guidelines](https://github.com/CCBR/CRISPIN/tree/main/docs/CONTRIBUTING.md).

## References

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1 change: 0 additions & 1 deletion mkdocs.yml
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Expand Up @@ -95,5 +95,4 @@ nav:
- Developer Guide:
- How to contribute: contributing.md
- Release guide: release-guide.md
- Contributors: contributors.md
- Changelog: changelog.md

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