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test mageck mle w/ demo data #13

Merged
merged 5 commits into from
Sep 18, 2023
Merged

test mageck mle w/ demo data #13

merged 5 commits into from
Sep 18, 2023

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kelly-sovacool
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@kelly-sovacool kelly-sovacool commented Sep 15, 2023

Changes

  • Adds a profile for testing the mageck mle subcommand. Can only run on biowulf as it is long-running.
  • Adds a blank design matrix for the ci_stub profile for github actions.

PR Checklist

(Strikethrough any points that are not applicable.)

  • This comment contains a description of changes with justifications, with any relevant issues linked.
  • [ ] Write unit tests for any new features, bug fixes, or other code changes. testing framework not yet implemented
  • [ ] Update docs if there are any API changes. on backburner until before public release
  • [ ] If a new nextflow process is implemented:
    • [ ] docker/singularity container is defined.
    • [ ] stub is defined.
  • [ ] Update CHANGELOG.md with a one-line description of these changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/

@kelly-sovacool kelly-sovacool self-assigned this Sep 15, 2023
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The MLE job completed on biowulf in 8 hours with 32 cores.

@kelly-sovacool kelly-sovacool merged commit 3c83d60 into main Sep 18, 2023
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@kelly-sovacool kelly-sovacool added this to the 2023w38_0922 milestone Jan 10, 2024
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