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CRUISE 0.1.0
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@kelly-sovacool kelly-sovacool released this 20 Oct 17:42
· 72 commits to main since this release
v0.1.0
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Learn about vigilant mode.

This is the first release of CRUISE 🎉

New features

  • Trim adapters with cutadapt.
  • Run mageck count. (#9)
    • mageck count only runs if a count table isn't given.
  • Optional: run mageck test and mle. (#9)
    • mageck mle only runs if a design matrix is given.
  • Optional: run drugZ. (#10)
  • Optional: run BAGEL2. (#11)
    • fc (fold change)
    • bf (bayes factor)
    • pr (precision recall)
  • CLI (#16)
    • cruise init to initialize a project directory.
    • cruise run
      • --mode slurm to submit a slurm job to biowulf or frce.
      • --main path/to/main.nf to select a different local install of cruise, or specify the repo (CCBR/CRUISE) to get it from GitHub.
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