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CCBR · Sep 11, 2024 · e9f048c · e9f048c
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diff --git a/dev/reference/gb2gtf.html b/dev/reference/gb2gtf.html
diff --git a/dev/reference/homologfinder.html b/dev/reference/homologfinder.html
diff --git a/dev/reference/index.html b/dev/reference/index.html
@@ -153,9 +153,33 @@
       <ul id="quarto-sidebar-section-1" class="collapse list-unstyled sidebar-section depth1 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
+  <a href="../reference/gb2gtf.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">gb2gtf</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../reference/homologfinder.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">homologfinder</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../reference/intersect.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">intersect</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
   <a href="../reference/jobby.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">jobby</span></a>
   </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../reference/jobinfo.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">jobinfo</span></a>
+  </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
@@ -180,6 +204,12 @@
   <a href="../reference/shell.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">shell</span></a>
   </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../reference/templates.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">templates</span></a>
+  </div>
 </li>
       </ul>
   </li>
@@ -213,9 +243,25 @@ <h2 class="anchored" data-anchor-id="modules">Modules</h2>
 <table class="caption-top table">
 <tbody>
 <tr class="odd">
+<td><a href="../reference/gb2gtf.html#ccbr_tools.gb2gtf">gb2gtf</a></td>
+<td>Module for converting GenBank files to GTF format.</td>
+</tr>
+<tr class="even">
+<td><a href="../reference/homologfinder.html#ccbr_tools.homologfinder">homologfinder</a></td>
+<td>hf or HomologFinder finds homologs in human and mouse.</td>
+</tr>
+<tr class="odd">
+<td><a href="../reference/intersect.html#ccbr_tools.intersect">intersect</a></td>
+<td>Find the intersect of two files, returns the inner join</td>
+</tr>
+<tr class="even">
 <td><a href="../reference/jobby.html#ccbr_tools.jobby">jobby</a></td>
 <td>Display job information for past slurm job IDs</td>
 </tr>
+<tr class="odd">
+<td><a href="../reference/jobinfo.html#ccbr_tools.jobinfo">jobinfo</a></td>
+<td>Get HPC usage metadata for a list of slurm jobids on biowulf</td>
+</tr>
 <tr class="even">
 <td><a href="../reference/peek.html#ccbr_tools.peek">peek</a></td>
 <td>Take a peek at tab-delimited files</td>
@@ -232,6 +278,10 @@ <h2 class="anchored" data-anchor-id="modules">Modules</h2>
 <td><a href="../reference/shell.html#ccbr_tools.shell">shell</a></td>
 <td>Utility functions for shell command execution.</td>
 </tr>
+<tr class="even">
+<td><a href="../reference/templates.html#ccbr_tools.templates">templates</a></td>
+<td>Template files for CCBR Tools.</td>
+</tr>
 </tbody>
 </table>