fix: fix typo in set_tmp param

CCBR · Aug 21, 2023 · ceeb1bc · ceeb1bc
1 parent 65ff15a
commit ceeb1bc
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diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -8,6 +8,7 @@ import re
 import sys
 import glob
 import datetime
+import uuid
 
 ## FROM: https://github.com/skchronicles/RNA-seek/blob/main/rna-seek
 def rename(filename):

diff --git a/workflow/rules/somatic_snps.paired.smk b/workflow/rules/somatic_snps.paired.smk
@@ -409,7 +409,7 @@ rule varscan_paired:
         tumorsample = '{samples}',
         ver_varscan = config['tools']['varscan']['version'],
         rname = 'varscan',
-        tmpdir = set_tmp(),
+        set_tmp = set_tmp(),
     threads: 4
     envmodules:
         config['tools']['varscan']['modname'],