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feat: create DESeq object from RSEM expected counts #13

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merged 10 commits into from
Dec 28, 2023
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@kelly-sovacool kelly-sovacool commented Dec 28, 2023

Changes

New function create_deseq_obj() to construct a DESeq object from RSEM expected counts.

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PR Checklist

(Strikethrough any points that are not applicable.)

  • This comment contains a description of changes with justifications, with any relevant issues linked.
  • Write unit tests for any new features, bug fixes, or other code changes.
  • Update the docs if there are any API changes (roxygen comments, vignettes, readme, etc.).
  • Update NEWS.md with a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/
  • Run devtools::check() locally and fix all notes, warnings, and errors.

@kopardev kopardev added the reneeTools RepoName label Dec 28, 2023
@kelly-sovacool kelly-sovacool merged commit ff0908c into main Dec 28, 2023
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@kelly-sovacool kelly-sovacool deleted the iss-11 branch December 28, 2023 18:44
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Differential expression with DESeq2
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