Data freeze #2342
Workflow file for this run
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| name: Continuous Integration | |
| on: | |
| push: | |
| branches: ["*"] | |
| pull_request: | |
| branches: ["*"] | |
| jobs: | |
| test: | |
| strategy: | |
| matrix: | |
| python-version: [3.8, 3.9] | |
| runs-on: ubuntu-latest | |
| services: | |
| postgres: | |
| # Docker Hub image | |
| image: postgres:9.6 | |
| ports: | |
| - 5432:5432 | |
| env: | |
| POSTGRES_USER: cidcdev | |
| POSTGRES_PASSWORD: 1234 | |
| POSTGRES_DB: cidctest | |
| # Set health checks to wait until postgres has started | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.dev.txt | |
| pip install pytest-cov | |
| - name: Check code format with black | |
| run: | | |
| black --check cidc_api tests --target-version=py37 | |
| - name: Setup codeclimate test coverage reporter | |
| run: | | |
| curl -L https://codeclimate.com/downloads/test-reporter/test-reporter-latest-linux-amd64 > ./cc-test-reporter | |
| chmod +x ./cc-test-reporter | |
| ./cc-test-reporter before-build | |
| - name: Setup test database | |
| run: | | |
| docker exec -e PGPASSWORD=1234 ${{ job.services.postgres.id }} psql cidctest -U cidcdev -c " | |
| create extension citext; | |
| create extension pgcrypto; | |
| " | |
| - name: Test with pytest | |
| run: | | |
| pytest --cov=cidc_api -v | |
| - name: Report test coverage | |
| env: | |
| CC_TEST_REPORTER_ID: ${{ secrets.CC_TEST_REPORTER_ID }} | |
| run: | | |
| coverage xml | |
| ./cc-test-reporter after-build -t coverage.py --exit-code 0 | |
| build: | |
| runs-on: ubuntu-latest | |
| if: ${{ github.ref == 'refs/heads/master' || github.ref == 'refs/heads/production' }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python 3.7 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.7 | |
| - name: Install pypa/build | |
| run: | | |
| python -m pip install build --user | |
| - name: Build a binary wheel and a source tarball | |
| run: | | |
| python -m build --sdist --wheel --outdir dist/ . | |
| - name: Archive the build artifacts | |
| uses: actions/upload-artifact@v2 | |
| if: ${{ github.ref == 'refs/heads/master' }} | |
| with: | |
| name: build-artifacts | |
| path: dist | |
| pypi-publish: | |
| needs: [test, build] | |
| if: ${{ github.ref == 'refs/heads/master' }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/download-artifact@v2 | |
| with: | |
| name: build-artifacts | |
| path: dist | |
| - name: Publish package to PyPI | |
| uses: pypa/gh-action-pypi-publish@master | |
| with: | |
| skip_existing: true | |
| user: ${{ secrets.PYPI_USERNAME }} | |
| password: ${{ secrets.PYPI_PASSWORD }} | |
| gae-deploy: | |
| runs-on: ubuntu-latest | |
| needs: [build, test] | |
| if: ${{ github.ref == 'refs/heads/master' || github.ref == 'refs/heads/production' }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Cloud SDK | |
| uses: google-github-actions/setup-gcloud@v0 | |
| with: | |
| service_account_key: ${{ github.ref == 'refs/heads/production' && secrets.GCP_SA_KEY_PROD || secrets.GCP_SA_KEY_STAGING }} | |
| export_default_credentials: true | |
| - name: Deploy to App Engine (Prod) | |
| if: ${{ github.ref == 'refs/heads/production' }} | |
| run: | | |
| gcloud --quiet app deploy app.prod.yaml \ | |
| --project cidc-dfci \ | |
| --version "githubactions-${GITHUB_SHA:0:7}-$GITHUB_RUN_NUMBER" \ | |
| --no-cache | |
| - name: Deploy to App Engine (Staging) | |
| if: ${{ github.ref == 'refs/heads/master' }} | |
| run: | | |
| gcloud --quiet app deploy app.staging.yaml \ | |
| --project cidc-dfci-staging \ | |
| --version "githubactions-${GITHUB_SHA:0:7}-$GITHUB_RUN_NUMBER" \ | |
| --no-cache |