Merge pull request #31 from CIROH-UA/add_empirical_model

Add empirical model

singularity/singularity_ngen.def

@@ -5,7 +5,7 @@ From: rockylinux:9.1
     export TROUTE_REPO="CIROH-UA/t-route"
     export TROUTE_BRANCH="datastream"
     export NGEN_REPO="CIROH-UA/ngen"
-    export NGEN_BRANCH="main"
+    export NGEN_BRANCH="ngiab"
     export PATH="/usr/lib64/mpich/bin:$PATH"
     export PATH="/root/.cargo/bin:$PATH"
     export PATH="/ngen/.venv/bin:$PATH"
@@ -15,7 +15,7 @@ From: rockylinux:9.1
     TROUTE_REPO="CIROH-UA/t-route"
     TROUTE_BRANCH="datastream"
     NGEN_REPO="CIROH-UA/ngen"
-    NGEN_BRANCH="main"
+    NGEN_BRANCH="ngiab"
 
     # Install system dependencies
     echo "max_parallel_downloads=10" >> /etc/dnf/dnf.conf
@@ -140,6 +140,12 @@ From: rockylinux:9.1
     uv pip install --no-cache-dir netCDF4==1.6.3
     uv pip install numpy==$(/dmod/bin/ngen --info | grep -e 'NumPy Version: ' | cut -d ':' -f 2 | uniq | xargs)
 
+    # Install lstm
+    ls -l /ngen/ngen/extern
+    ls -l /ngen/ngen/extern/lstm
+    cp -r /ngen/ngen/extern/lstm/lstm/* /ngen/ngen/extern/lstm/
+    uv pip install --no-cache-dir /ngen/ngen/extern/lstm --extra-index-url https://download.pytorch.org/whl/cpu
+
     # Make everything in /ngen accessible
     chmod -R 755 /ngen
 

singularity/templates/guide/HelloNGEN.sh

@@ -89,9 +89,9 @@ select option in "${options[@]}"; do
   case $option in
     "Run NextGen model framework in serial mode"|"Run NextGen model framework in parallel mode")
       echo -e "\n"
-      n1=${selected_catchment:-$(read -p "Enter the hydrofabric catchment file path: " n1; echo "$n1")}
-      n2=${selected_nexus:-$(read -p "Enter the hydrofabric nexus file path: " n2; echo "$n2")}
-      n3=${selected_realization:-$(read -p "Enter the Realization file path: " n3; echo "$n3")}
+      n1=${selected_catchment:-$(read -erp "Enter the hydrofabric catchment file path: " n1; echo "$n1")}
+      n2=${selected_nexus:-$(read -erp "Enter the hydrofabric nexus file path: " n2; echo "$n2")}
+      n3=${selected_realization:-$(read -erp "Enter the Realization file path: " n3; echo "$n3")}
 
       echo -e "${GREEN}Selected files:\nCatchment: $n1\nNexus: $n2\nRealization: $n3${RESET}\n"