Code and input files from "The genomic origins of the world’s first farmers" publication (Marchi et al., Cell, 2022).
- ATLAS folder: files necessary to perform the ATLAS-pipeline (variant calling)
- dataFilteringandAssembling: code to filter vcf files generated from the ATLAS variant calling pipeline
- AverageNucleotideDivergence.txt: code to compute the average nucleotide divergence between pairs of samples
- GenomicHeterozygosity.txt: code to compute the neutral genomic heterozygosity per genome
- DFE folder: files necessary to run the DFE inference pipeline
- Demography folder: input files to perform demographic inference with fastsimcoal2
Cite this article in press as: Marchi et al., The genomic origins of the world’s first farmers, Cell (2022), https://doi.org/10.1016/j.cell.2022.04.008.