Cleaned up dependencies, minor update to demos on boundary edges and …

…curves and mesh grouping

Manifest.toml

@@ -2,7 +2,7 @@
 
 julia_version = "1.10.1"
 manifest_format = "2.0"
-project_hash = "605ab7cd5a06e8048cf84924cbec19c5085ec0ef"
+project_hash = "d033fa29a644db60fc5e6aeb38e2ece2b7d0fc92"
 
 [[deps.AbstractFFTs]]
 deps = ["LinearAlgebra"]
@@ -47,15 +47,16 @@ version = "1.1.1"
 
 [[deps.ArrayInterface]]
 deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75"
+git-tree-sha1 = "881e43f1aa014a6f75c8fc0847860e00a1500846"
 uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
-version = "7.7.1"
+version = "7.8.0"
 
     [deps.ArrayInterface.extensions]
     ArrayInterfaceBandedMatricesExt = "BandedMatrices"
     ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices"
     ArrayInterfaceCUDAExt = "CUDA"
     ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore"
+    ArrayInterfaceReverseDiffExt = "ReverseDiff"
     ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore"
     ArrayInterfaceTrackerExt = "Tracker"
 
@@ -64,14 +65,15 @@ version = "7.7.1"
     BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0"
     CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
     GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527"
+    ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
     StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
     Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
 
 [[deps.ArrayLayouts]]
 deps = ["FillArrays", "LinearAlgebra"]
-git-tree-sha1 = "64d582bcb9c93ac741234789eeb4f16812413efb"
+git-tree-sha1 = "e46675dbc095ddfdf2b5fba247d5a25f34e1f8a2"
 uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a"
-version = "1.6.0"
+version = "1.6.1"
 weakdeps = ["SparseArrays"]
 
     [deps.ArrayLayouts.extensions]
@@ -80,12 +82,6 @@ weakdeps = ["SparseArrays"]
 [[deps.Artifacts]]
 uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
 
-[[deps.AssetRegistry]]
-deps = ["Distributed", "JSON", "Pidfile", "SHA", "Test"]
-git-tree-sha1 = "b25e88db7944f98789130d7b503276bc34bc098e"
-uuid = "bf4720bc-e11a-5d0c-854e-bdca1663c893"
-version = "0.1.0"
-
 [[deps.Automa]]
 deps = ["PrecompileTools", "TranscodingStreams"]
 git-tree-sha1 = "588e0d680ad1d7201d4c6a804dcb1cd9cba79fbb"
@@ -129,11 +125,6 @@ git-tree-sha1 = "f1dff6729bc61f4d49e140da1af55dcd1ac97b2f"
 uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
 version = "1.5.0"
 
-[[deps.BitFlags]]
-git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b"
-uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35"
-version = "0.1.8"
-
 [[deps.Bzip2_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd"
@@ -168,9 +159,9 @@ version = "0.5.1"
 
 [[deps.ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra"]
-git-tree-sha1 = "aef70bb349b20aa81a82a19704c3ef339d4ee494"
+git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-version = "1.22.1"
+version = "1.23.0"
 weakdeps = ["SparseArrays"]
 
     [deps.ChainRulesCore.extensions]
@@ -248,12 +239,6 @@ deps = ["Artifacts", "Libdl"]
 uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
 version = "1.1.0+0"
 
-[[deps.ConcurrentUtilities]]
-deps = ["Serialization", "Sockets"]
-git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b"
-uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
-version = "2.3.1"
-
 [[deps.ConstructionBase]]
 deps = ["LinearAlgebra"]
 git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9"
@@ -277,9 +262,9 @@ version = "1.16.0"
 
 [[deps.DataStructures]]
 deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
-git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2"
+git-tree-sha1 = "0f4b5d62a88d8f59003e43c25a8a90de9eb76317"
 uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
-version = "0.18.17"
+version = "0.18.18"
 
 [[deps.DataValueInterfaces]]
 git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
@@ -373,12 +358,6 @@ git-tree-sha1 = "b3f2ff58735b5f024c392fde763f29b057e4b025"
 uuid = "429591f6-91af-11e9-00e2-59fbe8cec110"
 version = "2.2.8"
 
-[[deps.ExceptionUnwrapping]]
-deps = ["Test"]
-git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a"
-uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4"
-version = "0.1.10"
-
 [[deps.Expat_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
 git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c"
@@ -390,14 +369,6 @@ git-tree-sha1 = "2140cd04483da90b2da7f99b2add0750504fc39c"
 uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910"
 version = "0.1.2"
 
-[[deps.FEBio]]
-deps = ["GeometryBasics", "XML"]
-git-tree-sha1 = "21b504bca0b418b73ab23be15486bc1907f697ed"
-repo-rev = "main"
-repo-url = "https://github.com/febiosoftware/FEBio.jl"
-uuid = "c57eab10-e7d7-41f3-9039-a27761009b26"
-version = "0.1.0"
-
 [[deps.FFMPEG_jll]]
 deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"]
 git-tree-sha1 = "ab3f7e1819dba9434a3a5126510c8fda3a4e7000"
@@ -522,12 +493,6 @@ git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91"
 uuid = "559328eb-81f9-559d-9380-de523a88c83c"
 version = "1.0.10+0"
 
-[[deps.FunctionalCollections]]
-deps = ["Test"]
-git-tree-sha1 = "04cb9cfaa6ba5311973994fe3496ddec19b6292a"
-uuid = "de31a74c-ac4f-5751-b3fd-e18cd04993ca"
-version = "0.5.0"
-
 [[deps.Future]]
 deps = ["Random"]
 uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
@@ -591,12 +556,6 @@ git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2"
 uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe"
 version = "1.0.2"
 
-[[deps.HTTP]]
-deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
-git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8"
-uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
-version = "1.10.2"
-
 [[deps.HarfBuzz_jll]]
 deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"]
 git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3"
@@ -903,12 +862,6 @@ version = "0.3.27"
 [[deps.Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
-[[deps.LoggingExtras]]
-deps = ["Dates", "Logging"]
-git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075"
-uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
-version = "1.0.3"
-
 [[deps.MKL_jll]]
 deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"]
 git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0"
@@ -944,22 +897,16 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
 
 [[deps.MathOptInterface]]
 deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"]
-git-tree-sha1 = "e8b98c868029d007102dc5f98986c81f33b0ec37"
+git-tree-sha1 = "679c1aec6934d322783bd15db4d18f898653be4f"
 uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
-version = "1.26.0"
+version = "1.27.0"
 
 [[deps.MathTeXEngine]]
 deps = ["AbstractTrees", "Automa", "DataStructures", "FreeTypeAbstraction", "GeometryBasics", "LaTeXStrings", "REPL", "RelocatableFolders", "UnicodeFun"]
 git-tree-sha1 = "96ca8a313eb6437db5ffe946c457a401bbb8ce1d"
 uuid = "0a4f8689-d25c-4efe-a92b-7142dfc1aa53"
 version = "0.5.7"
 
-[[deps.MbedTLS]]
-deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"]
-git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf"
-uuid = "739be429-bea8-5141-9913-cc70e7f3736d"
-version = "1.1.9"
-
 [[deps.MbedTLS_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
@@ -1076,12 +1023,6 @@ deps = ["Artifacts", "Libdl"]
 uuid = "05823500-19ac-5b8b-9628-191a04bc5112"
 version = "0.8.1+2"
 
-[[deps.OpenSSL]]
-deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"]
-git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2"
-uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c"
-version = "1.4.1"
-
 [[deps.OpenSSL_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
 git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c"
@@ -1158,12 +1099,6 @@ git-tree-sha1 = "eb3f9df2457819bf0a9019bd93cc451697a0751e"
 uuid = "2ae35dd2-176d-5d53-8349-f30d82d94d4f"
 version = "0.4.20"
 
-[[deps.Pidfile]]
-deps = ["FileWatching", "Test"]
-git-tree-sha1 = "2d8aaf8ee10df53d0dfb9b8ee44ae7c04ced2b03"
-uuid = "fa939f87-e72e-5be4-a000-7fc836dbe307"
-version = "1.3.0"
-
 [[deps.PikaParser]]
 deps = ["DocStringExtensions"]
 git-tree-sha1 = "d6ff87de27ff3082131f31a714d25ab6d0a88abf"
@@ -1225,9 +1160,9 @@ version = "1.2.0"
 
 [[deps.Preferences]]
 deps = ["TOML"]
-git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e"
+git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6"
 uuid = "21216c6a-2e73-6563-6e65-726566657250"
-version = "1.4.1"
+version = "1.4.3"
 
 [[deps.Primes]]
 deps = ["IntegerMathUtils"]
@@ -1245,9 +1180,9 @@ uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79"
 
 [[deps.ProgressMeter]]
 deps = ["Distributed", "Printf"]
-git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c"
+git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad"
 uuid = "92933f4c-e287-5a05-a399-4b506db050ca"
-version = "1.9.0"
+version = "1.10.0"
 
 [[deps.QOI]]
 deps = ["ColorTypes", "FileIO", "FixedPointNumbers"]
@@ -1290,12 +1225,6 @@ weakdeps = ["FixedPointNumbers"]
     [deps.Ratios.extensions]
     RatiosFixedPointNumbersExt = "FixedPointNumbers"
 
-[[deps.Reactive]]
-deps = ["DataStructures", "Distributed", "Test"]
-git-tree-sha1 = "5862d915387ebb954016f50a88e34f79a9e5fcd2"
-uuid = "a223df75-4e93-5b7c-acf9-bdd599c0f4de"
-version = "0.8.3"
-
 [[deps.RealDot]]
 deps = ["LinearAlgebra"]
 git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9"
@@ -1399,11 +1328,6 @@ git-tree-sha1 = "d263a08ec505853a5ff1c1ebde2070419e3f28e9"
 uuid = "73760f76-fbc4-59ce-8f25-708e95d2df96"
 version = "0.4.0"
 
-[[deps.SimpleBufferStream]]
-git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1"
-uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7"
-version = "1.1.0"
-
 [[deps.SimpleGraphs]]
 deps = ["AbstractLattices", "Combinatorics", "DataStructures", "IterTools", "LightXML", "LinearAlgebra", "LinearAlgebraX", "Optim", "Primes", "Random", "RingLists", "SimplePartitions", "SimplePolynomials", "SimpleRandom", "SparseArrays", "Statistics"]
 git-tree-sha1 = "f65caa24a622f985cc341de81d3f9744435d0d0f"
@@ -1470,12 +1394,6 @@ git-tree-sha1 = "10dc702932fe05a0e09b8e5955f00794ea1e8b12"
 uuid = "c5dd0088-6c3f-4803-b00e-f31a60c170fa"
 version = "1.1.8"
 
-[[deps.StableRNGs]]
-deps = ["Random", "Test"]
-git-tree-sha1 = "ddc1a7b85e760b5285b50b882fa91e40c603be47"
-uuid = "860ef19b-820b-49d6-a774-d7a799459cd3"
-version = "1.0.1"
-
 [[deps.StackViews]]
 deps = ["OffsetArrays"]
 git-tree-sha1 = "46e589465204cd0c08b4bd97385e4fa79a0c770c"
@@ -1594,28 +1512,16 @@ version = "0.1.1"
 deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
 uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
-[[deps.TetGen]]
-deps = ["DocStringExtensions", "GeometryBasics", "LinearAlgebra", "Printf", "StaticArrays", "TetGen_jll"]
-git-tree-sha1 = "c996d334a5a3bd29c180df777b2977153741c869"
-uuid = "c5d3f3f7-f850-59f6-8a2e-ffc6dc1317ea"
-version = "1.5.1"
-
-[[deps.TetGen_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "9ceedd691bce040e24126a56354f20d71554a495"
-uuid = "b47fdcd6-d2c1-58e9-bbba-c1cee8d8c179"
-version = "1.5.3+0"
-
 [[deps.TiffImages]]
 deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "UUIDs"]
 git-tree-sha1 = "34cc045dd0aaa59b8bbe86c644679bc57f1d5bd0"
 uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69"
 version = "0.6.8"
 
 [[deps.TranscodingStreams]]
-git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f"
+git-tree-sha1 = "3caa21522e7efac1ba21834a03734c57b4611c7e"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.10.3"
+version = "0.10.4"
 weakdeps = ["Random", "Test"]
 
     [deps.TranscodingStreams.extensions]
@@ -1631,11 +1537,6 @@ git-tree-sha1 = "41d61b1c545b06279871ef1a4b5fcb2cac2191cd"
 uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6"
 version = "1.5.0"
 
-[[deps.URIs]]
-git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b"
-uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
-version = "1.5.1"
-
 [[deps.UUIDs]]
 deps = ["Random", "SHA"]
 uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
@@ -1654,24 +1555,6 @@ git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf"
 uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1"
 version = "0.4.1"
 
-[[deps.WebIO]]
-deps = ["AssetRegistry", "Base64", "Distributed", "FunctionalCollections", "JSON", "Logging", "Observables", "Pkg", "Random", "Requires", "Sockets", "UUIDs", "WebSockets", "Widgets"]
-git-tree-sha1 = "0eef0765186f7452e52236fa42ca8c9b3c11c6e3"
-uuid = "0f1e0344-ec1d-5b48-a673-e5cf874b6c29"
-version = "0.8.21"
-
-[[deps.WebSockets]]
-deps = ["Base64", "Dates", "HTTP", "Logging", "Sockets"]
-git-tree-sha1 = "4162e95e05e79922e44b9952ccbc262832e4ad07"
-uuid = "104b5d7c-a370-577a-8038-80a2059c5097"
-version = "1.6.0"
-
-[[deps.Widgets]]
-deps = ["Colors", "Dates", "Observables", "OrderedCollections"]
-git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a"
-uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62"
-version = "0.6.6"
-
 [[deps.WoodburyMatrices]]
 deps = ["LinearAlgebra", "SparseArrays"]
 git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511"

Project.toml

@@ -13,6 +13,5 @@ Interpolations = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 QuadGK = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
 Rotations = "6038ab10-8711-5258-84ad-4b1120ba62dc"
-SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 XML = "72c71f33-b9b6-44de-8c94-c961784809e2"