Reuse compliancy and backend code restructuring / refactoring

.gitattributes

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2024 The members of the EXAM Consortium
+#
+# SPDX-License-Identifier: EUPL-1.2
+
 # Set the default behavior, in case people don't have core.autocrlf set.
 * text=auto
 

.github/workflows/build.yml

@@ -0,0 +1,57 @@
+# SPDX-FileCopyrightText: 2024 The members of the EXAM Consortium
+#
+# SPDX-License-Identifier: EUPL-1.2
+
+name: Build
+
+on: [push]
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+
+    services:
+      postgres:
+        image: postgres
+        env:
+          POSTGRES_DB: exam_test
+          POSTGRES_USER: exam
+          POSTGRES_PASSWORD: exam
+        options: >-
+          --health-cmd pg_isready
+          --health-interval 10s
+          --health-timeout 5s
+          --health-retries 5
+        ports:
+          - 5432:5432
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Set up JDK
+        uses: actions/setup-java@v4
+        with:
+          java-version: 21
+          distribution: temurin
+
+      - name: Set up Node
+        uses: actions/setup-node@v4
+        with:
+          node-version: 20.x
+
+      - name: Check REUSE compliance
+        uses: fsfe/reuse-action@v4
+
+      - name: Build UI
+        run: |
+          rm -rf node_modules
+          npm i
+          npm run check-format
+          npm run check-lint
+          npm run build
+
+      - name: Build backend and run tests
+        run: |
+          sed -i 's/\/var\/log\/exam/logs/g' $GITHUB_WORKSPACE/conf/logback.xml
+          sbt test

.github/workflows/codeql.yml

@@ -0,0 +1,115 @@
+# SPDX-FileCopyrightText: 2024 The members of the EXAM Consortium
+#
+# SPDX-License-Identifier: EUPL-1.2
+
+# For most projects, this workflow file will not need changing; you simply need
+# to commit it to your repository.
+#
+# You may wish to alter this file to override the set of languages analyzed,
+# or to provide custom queries or build logic.
+#
+# ******** NOTE ********
+# We have attempted to detect the languages in your repository. Please check
+# the `language` matrix defined below to confirm you have the correct set of
+# supported CodeQL languages.
+#
+name: "CodeQL"
+
+on:
+  push:
+    branches: ["master", "dev"]
+  pull_request:
+    branches: ["master", "dev"]
+  schedule:
+    - cron: "23 1 * * 0"
+
+jobs:
+  analyze:
+    name: Analyze (${{ matrix.language }})
+    # Runner size impacts CodeQL analysis time. To learn more, please see:
+    #   - https://gh.io/recommended-hardware-resources-for-running-codeql
+    #   - https://gh.io/supported-runners-and-hardware-resources
+    #   - https://gh.io/using-larger-runners (GitHub.com only)
+    # Consider using larger runners or machines with greater resources for possible analysis time improvements.
+    runs-on: ${{ (matrix.language == 'swift' && 'macos-latest') || 'ubuntu-latest' }}
+    timeout-minutes: ${{ (matrix.language == 'swift' && 120) || 360 }}
+    permissions:
+      # required for all workflows
+      security-events: write
+
+      # required to fetch internal or private CodeQL packs
+      packages: read
+
+      # only required for workflows in private repositories
+      actions: read
+      contents: read
+
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - language: javascript
+            build-mode: none
+          - language: python
+            build-mode: none
+        # CodeQL supports the following values keywords for 'language': 'c-cpp', 'csharp', 'go', 'java-kotlin', 'javascript-typescript', 'python', 'ruby', 'swift'
+        # Use `c-cpp` to analyze code written in C, C++ or both
+        # Use 'java-kotlin' to analyze code written in Java, Kotlin or both
+        # Use 'javascript-typescript' to analyze code written in JavaScript, TypeScript or both
+        # To learn more about changing the languages that are analyzed or customizing the build mode for your analysis,
+        # see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/customizing-your-advanced-setup-for-code-scanning.
+        # If you are analyzing a compiled language, you can modify the 'build-mode' for that language to customize how
+        # your codebase is analyzed, see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/codeql-code-scanning-for-compiled-languages
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      # Initializes the CodeQL tools for scanning.
+      - name: Initialize CodeQL
+        uses: github/codeql-action/init@v3
+        with:
+          languages: ${{ matrix.language }}
+          build-mode: ${{ matrix.build-mode }}
+          # If you wish to specify custom queries, you can do so here or in a config file.
+          # By default, queries listed here will override any specified in a config file.
+          # Prefix the list here with "+" to use these queries and those in the config file.
+
+          # For more details on CodeQL's query packs, refer to: https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
+          # queries: security-extended,security-and-quality
+
+      # If the analyze step fails for one of the languages you are analyzing with
+      # "We were unable to automatically build your code", modify the matrix above
+      # to set the build mode to "manual" for that language. Then modify this step
+      # to build your code.
+      # ℹ️ Command-line programs to run using the OS shell.
+      # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
+      - if: matrix.build-mode == 'manual'
+        shell: bash
+        run: |
+          echo 'If you are using a "manual" build mode for one or more of the' \
+            'languages you are analyzing, replace this with the commands to build' \
+            'your code, for example:'
+          echo '  make bootstrap'
+          echo '  make release'
+          exit 1
+
+      - name: Perform CodeQL Analysis
+        uses: github/codeql-action/analyze@v3
+        with:
+          category: "/language:${{matrix.language}}"
+          upload: false # disable the upload here - we will upload in a different action
+          output: sarif-results
+
+      - name: Filter SARIF
+        uses: advanced-security/filter-sarif@v1
+        with:
+          # filter out all vendor component directories
+          patterns: |
+            -ui/src/assets/components/vendor/**/*
+          input: sarif-results/${{ matrix.language }}.sarif
+          output: sarif-results/${{ matrix.language }}.sarif
+
+      - name: Upload SARIF
+        uses: github/codeql-action/upload-sarif@v3
+        with:
+          sarif_file: sarif-results/${{ matrix.language }}.sarif

.gitignore

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2024 The members of the EXAM Consortium
+#
+# SPDX-License-Identifier: EUPL-1.2
+
 public
 conf/local.conf
 node_modules
@@ -8,3 +12,4 @@ default-create-all.sql
 /data/
 .angular
 dist
+ui/src/assets/components/vendor/mathjax

.scalafix.conf

@@ -1,6 +1,10 @@
+# SPDX-FileCopyrightText: 2024 The members of the EXAM Consortium
+#
+# SPDX-License-Identifier: EUPL-1.2
+
 rules = [DisableSyntax, OrganizeImports, RedundantSyntax]
 OrganizeImports {
-  removeUnused = false
+  removeUnused = true
   groupedImports = Keep
   coalesceToWildcardImportThreshold = 3
 }

.scalafmt.conf

@@ -1,3 +1,6 @@
+#SPDX-FileCopyrightText: 2024 The members of the EXAM Consortium
+#
+#SPDX-License-Identifier: EUPL-1.2
 version = "3.7.7"
 runner.dialect = scala3
 align.preset = more