CliMA · Sbozzolo · Oct 29, 2024
diff --git a/.buildkite/gpu_pipeline/pipeline.yml b/.buildkite/gpu_pipeline/pipeline.yml
@@ -31,9 +31,6 @@ steps:
       - julia --project=perf -e 'using CUDA; CUDA.precompile_runtime()'
       - julia --project=perf -e 'using Pkg; Pkg.status()'
 
-      - echo "--- Download artifacts"
-      - julia --project=examples artifacts/download_artifacts.jl
-
     agents:
       slurm_gpus: 1
       slurm_cpus_per_task: 8

diff --git a/.buildkite/longruns_gpu/pipeline.yml b/.buildkite/longruns_gpu/pipeline.yml
@@ -26,9 +26,6 @@ steps:
       - julia --project=examples -e 'using CUDA; CUDA.precompile_runtime()'
       - julia --project=examples -e 'using Pkg; Pkg.status()'
 
-      - echo "--- Download artifacts"
-      - julia --project=examples artifacts/download_artifacts.jl
-
     agents:
       slurm_gpus: 1
       slurm_cpus_per_task: 8

diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
@@ -44,9 +44,6 @@ steps:
       - "julia --project=calibration/test -e 'using Pkg; Pkg.precompile()'"
       - "julia --project=calibration/test -e 'using Pkg; Pkg.status()'"
 
-      - echo "--- Download artifacts"
-      - "julia --project=examples artifacts/download_artifacts.jl"
-
     agents:
       slurm_cpus_per_task: 8
       slurm_gpus: 1

diff --git a/.dev/Manifest.toml b/.dev/Manifest.toml
@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.10.5"
+julia_version = "1.10.6"
 manifest_format = "2.0"
 project_hash = "b280bcf3b481823c97fa1a62c1b5e65114b8fa18"
 

diff --git a/NEWS.md b/NEWS.md
@@ -1,26 +1,29 @@
 ClimaAtmos.jl Release Notes
 ============================
 
-Main
+v0.27.8
 -------
 
 ### Features
 
 ### New option for prescribing clouds in radiation
 
-When `prescribe_clouds_in_radiation` is set to true, clouds in radiation 
+When `prescribe_clouds_in_radiation` is set to true, clouds in radiation
 is prescribed from a file (monthly cloud properties in 2010 from ERA5).
 PR [3405](https://github.com/CliMA/ClimaAtmos.jl/pull/3405)
 
-### ETOPO2022 60arc-second topography dataset. 
+### ![][badge-✨feature/enhancement] Improvements to Earth's topography
 
-- Update artifacts to use 60arc-second ETOPO2022 ice-surface topography
-  dataset. Update surface smoothing functions to rely only on spectral 
-  Laplacian operations. Update raw-topo gravity wave parameterization 
-  dataset. Update interfaces in `make_hybrid_spaces` to support new 
-  inputs using `SpaceVaryingInput` utility. Include a simple example
-  to generate spectra from scalar variables. 
-  PR [3378](https://github.com/CliMA/ClimaAtmos.jl/pull/3378)
+Starting with `0.27.8`, `ClimaAtmos` now uses the
+[ETOPO2022](https://www.ncei.noaa.gov/products/etopo-global-relief-model)
+dataset for topography (at 60arc-second resolution). The Gaussian smoothing
+scheme was removed in favor of a diffusive scheme controlled by the
+`topography_damping_factor`.
+
+`ClimaAtmos` now also comes with an a simple example to generate spectra from
+scalar variables.
+
+PR [3378](https://github.com/CliMA/ClimaAtmos.jl/pull/3378)
 
 v0.27.7
 -------

diff --git a/Project.toml b/Project.toml
@@ -1,11 +1,10 @@
 name = "ClimaAtmos"
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
 authors = ["Climate Modeling Alliance"]
-version = "0.27.7"
+version = "0.27.8"
 
 [deps]
 ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63"
-ArtifactWrappers = "a14bc488-3040-4b00-9dc1-f6467924858a"
 Artifacts = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
 AtmosphericProfilesLibrary = "86bc3604-9858-485a-bdbe-831ec50de11d"
 ClimaComms = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d"
@@ -37,7 +36,6 @@ YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6"
 
 [compat]
 ArgParse = "1"
-ArtifactWrappers = "0.2"
 Artifacts = "1"
 AtmosphericProfilesLibrary = "0.1.7"
 ClimaComms = "0.6.4"

diff --git a/docs/Manifest.toml b/docs/Manifest.toml
@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.10.5"
+julia_version = "1.10.6"
 manifest_format = "2.0"
 project_hash = "64afcb8dacf7a673d0068ba1a72602801e8d529a"
 
@@ -137,12 +137,6 @@ weakdeps = ["SparseArrays"]
     [deps.ArrayLayouts.extensions]
     ArrayLayoutsSparseArraysExt = "SparseArrays"
 
-[[deps.ArtifactWrappers]]
-deps = ["Downloads", "Pkg"]
-git-tree-sha1 = "760f4c06375735829b8c1b67560b608b9dba4c6a"
-uuid = "a14bc488-3040-4b00-9dc1-f6467924858a"
-version = "0.2.0"
-
 [[deps.Artifacts]]
 uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
 
@@ -295,10 +289,10 @@ weakdeps = ["SparseArrays"]
     ChainRulesCoreSparseArraysExt = "SparseArrays"
 
 [[deps.ClimaAtmos]]
-deps = ["Adapt", "ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "RRTMGP", "Random", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "UnrolledUtilities", "YAML"]
+deps = ["ArgParse", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "RRTMGP", "Random", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "UnrolledUtilities", "YAML"]
 path = ".."
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
-version = "0.27.7"
+version = "0.27.8"
 
 [[deps.ClimaComms]]
 git-tree-sha1 = "ec303a4a66dc0a0ebe15a639a7e685afeaa0daef"
@@ -827,9 +821,9 @@ version = "2.13.2+0"
 
 [[deps.FreeTypeAbstraction]]
 deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics"]
-git-tree-sha1 = "2493cdfd0740015955a8e46de4ef28f49460d8bc"
+git-tree-sha1 = "84dfe824bd6fdf2a5d73bb187ff31b5549b2a79c"
 uuid = "663a7486-cb36-511b-a19d-713bb74d65c9"
-version = "0.10.3"
+version = "0.10.4"
 
 [[deps.FriBidi_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -1825,9 +1819,9 @@ version = "1.3.4"
 
 [[deps.RecursiveArrayTools]]
 deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
-git-tree-sha1 = "b034171b93aebc81b3e1890a036d13a9c4a9e3e0"
+git-tree-sha1 = "43cdc0987135597867a37fc3e8e0fc9fdef6ac66"
 uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
-version = "3.27.0"
+version = "3.27.1"
 
     [deps.RecursiveArrayTools.extensions]
     RecursiveArrayToolsFastBroadcastExt = "FastBroadcast"
@@ -2167,9 +2161,9 @@ weakdeps = ["ClimaParams"]
 
 [[deps.SymbolicIndexingInterface]]
 deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"]
-git-tree-sha1 = "4bc96df5d71515b1cb86dd626915f06f4c0d46f5"
+git-tree-sha1 = "20cf607cafb31f922bce84d60379203e7a126911"
 uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5"
-version = "0.3.33"
+version = "0.3.34"
 
 [[deps.TOML]]
 deps = ["Dates"]

diff --git a/examples/Manifest.toml b/examples/Manifest.toml
@@ -1,8 +1,8 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.10.5"
+julia_version = "1.10.6"
 manifest_format = "2.0"
-project_hash = "0650226b22aae022a4fd4dd08a3323bee9fb506d"
+project_hash = "8fc0a28be2d59204b24addc96ac4d34bf8655ff1"
 
 [[deps.ADTypes]]
 git-tree-sha1 = "eea5d80188827b35333801ef97a40c2ed653b081"
@@ -319,10 +319,10 @@ version = "0.5.7"
     Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
 
 [[deps.ClimaAtmos]]
-deps = ["Adapt", "ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "RRTMGP", "Random", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "UnrolledUtilities", "YAML"]
+deps = ["ArgParse", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "RRTMGP", "Random", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "UnrolledUtilities", "YAML"]
 path = ".."
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
-version = "0.27.7"
+version = "0.27.8"
 
 [[deps.ClimaComms]]
 git-tree-sha1 = "ec303a4a66dc0a0ebe15a639a7e685afeaa0daef"
@@ -866,9 +866,9 @@ version = "2.13.2+0"
 
 [[deps.FreeTypeAbstraction]]
 deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics"]
-git-tree-sha1 = "2493cdfd0740015955a8e46de4ef28f49460d8bc"
+git-tree-sha1 = "84dfe824bd6fdf2a5d73bb187ff31b5549b2a79c"
 uuid = "663a7486-cb36-511b-a19d-713bb74d65c9"
-version = "0.10.3"
+version = "0.10.4"
 
 [[deps.FriBidi_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -1977,9 +1977,9 @@ version = "1.3.4"
 
 [[deps.RecursiveArrayTools]]
 deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
-git-tree-sha1 = "b034171b93aebc81b3e1890a036d13a9c4a9e3e0"
+git-tree-sha1 = "43cdc0987135597867a37fc3e8e0fc9fdef6ac66"
 uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
-version = "3.27.0"
+version = "3.27.1"
 
     [deps.RecursiveArrayTools.extensions]
     RecursiveArrayToolsFastBroadcastExt = "FastBroadcast"
@@ -2313,9 +2313,9 @@ weakdeps = ["ClimaParams"]
 
 [[deps.SymbolicIndexingInterface]]
 deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"]
-git-tree-sha1 = "4bc96df5d71515b1cb86dd626915f06f4c0d46f5"
+git-tree-sha1 = "20cf607cafb31f922bce84d60379203e7a126911"
 uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5"
-version = "0.3.33"
+version = "0.3.34"
 
 [[deps.TOML]]
 deps = ["Dates"]

diff --git a/perf/Manifest.toml b/perf/Manifest.toml
@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.10.5"
+julia_version = "1.10.6"
 manifest_format = "2.0"
 project_hash = "1b8f2c1a4c1bc4fd937f4c1ec969061b8acdbb19"
 
@@ -330,10 +330,10 @@ version = "0.5.6"
     GeoMakie = "db073c08-6b98-4ee5-b6a4-5efafb3259c6"
 
 [[deps.ClimaAtmos]]
-deps = ["Adapt", "ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "RRTMGP", "Random", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "UnrolledUtilities", "YAML"]
+deps = ["ArgParse", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "RRTMGP", "Random", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "UnrolledUtilities", "YAML"]
 path = ".."
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
-version = "0.27.7"
+version = "0.27.8"
 
 [[deps.ClimaComms]]
 git-tree-sha1 = "ec303a4a66dc0a0ebe15a639a7e685afeaa0daef"
@@ -908,9 +908,9 @@ version = "2.13.2+0"
 
 [[deps.FreeTypeAbstraction]]
 deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics"]
-git-tree-sha1 = "2493cdfd0740015955a8e46de4ef28f49460d8bc"
+git-tree-sha1 = "84dfe824bd6fdf2a5d73bb187ff31b5549b2a79c"
 uuid = "663a7486-cb36-511b-a19d-713bb74d65c9"
-version = "0.10.3"
+version = "0.10.4"
 
 [[deps.FriBidi_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -2073,9 +2073,9 @@ version = "1.3.4"
 
 [[deps.RecursiveArrayTools]]
 deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
-git-tree-sha1 = "b034171b93aebc81b3e1890a036d13a9c4a9e3e0"
+git-tree-sha1 = "43cdc0987135597867a37fc3e8e0fc9fdef6ac66"
 uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
-version = "3.27.0"
+version = "3.27.1"
 
     [deps.RecursiveArrayTools.extensions]
     RecursiveArrayToolsFastBroadcastExt = "FastBroadcast"
@@ -2439,9 +2439,9 @@ weakdeps = ["ClimaParams"]
 
 [[deps.SymbolicIndexingInterface]]
 deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"]
-git-tree-sha1 = "4bc96df5d71515b1cb86dd626915f06f4c0d46f5"
+git-tree-sha1 = "20cf607cafb31f922bce84d60379203e7a126911"
 uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5"
-version = "0.3.33"
+version = "0.3.34"
 
 [[deps.TOML]]
 deps = ["Dates"]

diff --git a/src/parameterized_tendencies/gravity_wave_drag/orographic_gravity_wave.jl b/src/parameterized_tendencies/gravity_wave_drag/orographic_gravity_wave.jl
@@ -23,8 +23,6 @@ orographic_gravity_wave_cache(Y, ::Nothing) = (;)
 
 orographic_gravity_wave_tendency!(Yₜ, Y, p, t, ::Nothing) = nothing
 
-include(joinpath(pkgdir(ClimaAtmos), "artifacts", "artifact_funcs.jl"))
-
 function orographic_gravity_wave_cache(Y, ogw::OrographicGravityWave)
 
     @assert Spaces.topology(Spaces.horizontal_space(axes(Y.c))).mesh.domain isa

diff --git a/test/Project.toml b/test/Project.toml
@@ -1,6 +1,7 @@
 [deps]
 Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"
 ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63"
+ArtifactWrappers = "a14bc488-3040-4b00-9dc1-f6467924858a"
 AtmosphericProfilesLibrary = "86bc3604-9858-485a-bdbe-831ec50de11d"
 CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
 ClimaAtmos = "b2c96348-7fb7-4fe0-8da9-78d88439e717"

diff --git a/artifacts/artifact_funcs.jl → test/artifact_funcs.jl b/artifacts/artifact_funcs.jl → test/artifact_funcs.jl
diff --git a/test/dependencies.jl b/test/dependencies.jl
@@ -32,8 +32,6 @@ direct_dependencies =
 known_dependencies = Set([
     # ArgParse is used to read --config_file and --job_id from command line
     "ArgParse",
-    # ArtifactWrappers is used to topography and gravity wave NetCDF data
-    "ArtifactWrappers",
     "Artifacts",
     "AtmosphericProfilesLibrary",
     "ClimaComms",
@@ -55,7 +53,7 @@ known_dependencies = Set([
     "NCDatasets",
     "NVTX",
     "RRTMGP",
-    # used to reset seed for random number generator used for cloudy RRTMGP runs to enable bit-wise reproducibility for tests
+    # Random is used to reset seed for random number generator used for cloudy RRTMGP runs to enable bit-wise reproducibility for tests
     "Random",
     "SciMLBase",
     "StaticArrays",

diff --git a/artifacts/download_artifacts.jl → test/download_artifacts.jl b/artifacts/download_artifacts.jl → test/download_artifacts.jl
diff --git a/test/parameterized_tendencies/gravity_wave/non_orographic_gravity_wave/nogw_test_3d.jl b/test/parameterized_tendencies/gravity_wave/non_orographic_gravity_wave/nogw_test_3d.jl
@@ -61,7 +61,7 @@ source_level =
     argmin(abs.(center_z .- non_orographic_gravity_wave.gw_source_height))
 damp_level = length(center_z)
 
-include(joinpath(pkgdir(ClimaAtmos), "artifacts", "artifact_funcs.jl"))
+include(joinpath(@__DIR__, "../../../artifact_funcs.jl"))
 
 era_data = joinpath(era_global_dataset_path(), "box-era5-monthly.nc")
 

diff --git a/test/parameterized_tendencies/gravity_wave/non_orographic_gravity_wave/nogw_test_mima.jl b/test/parameterized_tendencies/gravity_wave/non_orographic_gravity_wave/nogw_test_mima.jl
@@ -87,7 +87,7 @@ end
 
 
 # MiMA data
-include(joinpath(pkgdir(ClimaAtmos), "artifacts", "artifact_funcs.jl"))
+include(joinpath(@__DIR__, "../../../artifact_funcs.jl"))
 mima_data = joinpath(mima_gwf_path(), "mima_gwf.nc")
 
 nt = NCDataset(mima_data) do ds

diff --git a/...ameterized_tendencies/gravity_wave/non_orographic_gravity_wave/nogw_test_single_column.jl b/...ameterized_tendencies/gravity_wave/non_orographic_gravity_wave/nogw_test_single_column.jl
@@ -64,7 +64,7 @@ source_level =
     argmin(abs.(center_z .- non_orographic_gravity_wave.gw_source_height))
 damp_level = length(center_z)
 
-include(joinpath(pkgdir(ClimaAtmos), "artifacts", "artifact_funcs.jl"))
+include(joinpath(@__DIR__, "../../../artifact_funcs.jl"))
 
 era_data =
     joinpath(era_single_column_dataset_path(), "box-single_column_test.nc")

diff --git a/test/parameterized_tendencies/gravity_wave/orographic_gravity_wave/ogwd_3d.jl b/test/parameterized_tendencies/gravity_wave/orographic_gravity_wave/ogwd_3d.jl
@@ -28,7 +28,7 @@ config.parsed_args["mesh_warp_type"] = "Linear";
 (; parsed_args) = config
 
 # load gfdl data
-include(joinpath(pkgdir(ClimaAtmos), "artifacts", "artifact_funcs.jl"))
+include(joinpath(@__DIR__, "../../../artifact_funcs.jl"))
 ncfile = joinpath(gfdl_ogw_data_path(), "gfdl_ogw.nc")
 nt = NCDataset(ncfile) do ds
     lon = Array(ds["lon"])

diff --git a/test/runtests.jl b/test/runtests.jl
@@ -7,6 +7,9 @@ redirect_stderr(IOContext(stderr, :stacktrace_types_limited => Ref(false)))
 using SafeTestsets
 using Test
 
+# Download test artifacts
+include("download_artifacts.jl")
+
 #! format: off
 @safetestset "Aqua" begin @time include("aqua.jl") end
 @safetestset "Dependencies" begin @time include("dependencies.jl") end