Use deep atmosphere equations by default

.buildkite/pipeline.yml

@@ -235,6 +235,12 @@ steps:
           julia --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/sphere_baroclinic_wave_equilmoist_conservation_source.yml
           --job_id sphere_baroclinic_wave_equilmoist_conservation_source
         artifact_paths: "sphere_baroclinic_wave_equilmoist_conservation_source/output_active/*"
+
+      - label: ":computer: baroclinic wave moist check conservation with sources (without bubble correction)"
+        command: >
+          julia --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/sphere_baroclinic_wave_equilmoist_conservation_source_no_bubble.yml
+          --job_id sphere_baroclinic_wave_equilmoist_conservation_source_no_bubble
+        artifact_paths: "sphere_baroclinic_wave_equilmoist_conservation_source_no_bubble/output_active/*"
 
   - group: "Sphere Examples (Dycore)"
     steps:
@@ -371,6 +377,15 @@ steps:
         artifact_paths: "aquaplanet_rhoe_equil_clearsky_tvinsol_0M_slabocean_ft64/output_active/*"
         agents:
           slurm_mem: 20GB
+
+      - label: ":computer: aquaplanet (ρe_tot) slabocean equilmoist allsky radiation monin_obukhov varying insolation float64 (without bubble correction)"
+        command: >
+          julia --color=yes --project=examples examples/hybrid/driver.jl
+          --config_file $CONFIG_PATH/aquaplanet_rhoe_equil_clearsky_tvinsol_0M_slabocean_ft64_nobubble.yml
+          --job_id aquaplanet_rhoe_equil_clearsky_tvinsol_0M_slabocean_ft64_nobubble
+        artifact_paths: "aquaplanet_rhoe_equil_clearsky_tvinsol_0M_slabocean_ft64_nobubble/output_active/*"
+        agents:
+          slurm_mem: 20GB
 
       - label: ":computer: aquaplanet (ρe_tot) rcemipii with diagnostic edmf"
         command: >

config/default_configs/default_config.yml

@@ -282,7 +282,7 @@ log_progress:
   value: true
 deep_atmosphere:
   help: "If true, use deep atmosphere equations and metric terms, otherwise assume columns are cylindrical (shallow atmosphere) [`true`, `false` (default)]"
-  value: false
+  value: true
 restart_file:
   help: "Path to HDF5 file to use as simulation starting point"
   value: ~

config/model_configs/aquaplanet_rhoe_equil_clearsky_tvinsol_0M_slabocean_ft64_nobubble.yml

@@ -0,0 +1,16 @@
+FLOAT_TYPE: "Float64"
+bubble: false
+dt_save_state_to_disk: "5days"
+t_end: "5days"
+moist: "equil"
+precip_model: "0M"
+surface_setup: "DefaultMoninObukhov"
+vert_diff: "DecayWithHeightDiffusion"
+implicit_diffusion: true
+approximate_linear_solve_iters: 2
+rad: "clearsky"
+insolation: "timevarying"
+dt_rad: "1hours"
+prognostic_surface: "PrognosticSurfaceTemperature"
+check_conservation: true
+bubble: false

config/model_configs/sphere_baroclinic_wave_equilmoist_conservation_source_no_bubble.yml

@@ -0,0 +1,16 @@
+initial_condition: "MoistBaroclinicWave"
+bubble: false
+dt: "400secs"
+t_end: "10days"
+moist: "equil"
+surface_setup: DefaultMoninObukhov
+prognostic_surface: "PrognosticSurfaceTemperature"
+rad: "clearsky"
+precip_model: "0M"
+vert_diff: true
+dt_save_state_to_disk: "5days"
+check_conservation: true
+diagnostics:
+  - short_name: [massa, energya, watera, energyo, watero]
+    period: 1days
+    writer: dict

examples/Manifest.toml

@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.10.7"
+julia_version = "1.10.2"
 manifest_format = "2.0"
 project_hash = "13bc74579bbfd1b4bab2e5d6cddd05f9a01dba06"
 
@@ -353,7 +353,9 @@ weakdeps = ["CUDA", "MPI"]
 
 [[deps.ClimaCore]]
 deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "StaticArrays", "Statistics", "Unrolled"]
-git-tree-sha1 = "7209c2ed595f535db446709b9d19e22f8b000736"
+git-tree-sha1 = "3b70643860eafe56ac38516c7b007acc3ba45493"
+repo-rev = "main"
+repo-url = "https://github.com/CliMA/ClimaCore.jl.git"
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
 version = "0.14.22"
 weakdeps = ["CUDA", "Krylov"]
@@ -546,7 +548,7 @@ weakdeps = ["Dates", "LinearAlgebra"]
 [[deps.CompilerSupportLibraries_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
-version = "1.1.1+0"
+version = "1.1.0+0"
 
 [[deps.CompositionsBase]]
 git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad"
@@ -2652,7 +2654,7 @@ version = "0.15.2+0"
 [[deps.libblastrampoline_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
-version = "5.11.0+0"
+version = "5.8.0+1"
 
 [[deps.libfdk_aac_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]

reproducibility_tests/ref_counter.jl

@@ -1,4 +1,4 @@
-196
+197
 
 # **README**
 #
@@ -20,6 +20,9 @@
 
 
 #=
+197
+- Set deep atmos config as default
+
 196
 - Set bubble correction to false as default
 
@@ -45,6 +48,9 @@
 - We don't know why, but the regression tests are failing because there is no reference dataset.
   We are bumping the reference counter to see if this fixes the issue.
 
+189
+- Deep-atmos configuration is now the default
+
 188
 - Updated dependencies