Added unit tests

Clinical-Genomics-Lund · Dec 18, 2023 · 6393c38 · 6393c38
1 parent 62d4a89
commit 6393c38
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Showing 7 changed files with 1,204 additions and 8 deletions.
diff --git a/tests/fixtures/ecoli/__init__.py b/tests/fixtures/ecoli/__init__.py
@@ -1,8 +1,9 @@
 """Ecoli input data fixutres."""
 
-import pytest
 import json
 
+import pytest
+
 from ..fixtures import data_path
 
 
@@ -37,10 +38,20 @@ def ecoli_resfinder_meta_path(data_path):
 
 
 @pytest.fixture()
-def ecoli_virulencefinder_path(data_path):
+def ecoli_virulencefinder_wo_stx_path(data_path):
     return str(data_path.joinpath("ecoli", "virulencefinder.json"))
 
 
+@pytest.fixture()
+def ecoli_virulencefinder_stx_pred_stx_path(data_path):
+    return str(data_path.joinpath("ecoli", "virulencefinder.stx_pred.stx.json"))
+
+
+@pytest.fixture()
+def ecoli_virulencefinder_stx_pred_no_stx_path(data_path):
+    return str(data_path.joinpath("ecoli", "virulencefinder.stx_pred.no_stx.json"))
+
+
 @pytest.fixture()
 def ecoli_virulencefinder_meta_path(data_path):
     return str(data_path.joinpath("ecoli", "virulencefinder_meta.json"))

diff --git a/tests/fixtures/ecoli/virulencefinder.json b/tests/fixtures/ecoli/virulencefinder.json