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# Clinical-Genomics-Lund/jasentool: Changelog | ||
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All notable changes to this project will be documented in this file. | ||
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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) | ||
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). | ||
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## [v0.2.0] | ||
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### Added | ||
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- Added tb validation notebook | ||
- Added output csv for failed validation samples | ||
- Added differential matrix for validation | ||
- Added saureus validation notebook | ||
- Added `--generate_matrix` argument to cli | ||
- Added `alter_sample_id` filter | ||
- Added summed differential matrix | ||
- Added mean coverage plot | ||
- Added jitter to mean coverage boxplot | ||
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### Fixed | ||
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- Fixed `pyproject.toml` setuptools bug | ||
- Fixed cgmlst comparison and plots | ||
- Fixed `fix` subarg | ||
- Fixed TN/TP/FN/FP plots | ||
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### Changed | ||
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- Changed id format for fix and missing | ||
- Changed matrix to boxplot, jitter, and annotate |