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Add CHANGELOG and update to v0.2.0
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ryanjameskennedy committed Jul 30, 2024
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# Clinical-Genomics-Lund/jasentool: Changelog

All notable changes to this project will be documented in this file.

The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [v0.2.0]

### Added

- Added tb validation notebook
- Added output csv for failed validation samples
- Added differential matrix for validation
- Added saureus validation notebook
- Added `--generate_matrix` argument to cli
- Added `alter_sample_id` filter
- Added summed differential matrix
- Added mean coverage plot
- Added jitter to mean coverage boxplot

### Fixed

- Fixed `pyproject.toml` setuptools bug
- Fixed cgmlst comparison and plots
- Fixed `fix` subarg
- Fixed TN/TP/FN/FP plots

### Changed

- Changed id format for fix and missing
- Changed matrix to boxplot, jitter, and annotate

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