Add verifybamid2

[A97paupic]

Description and reviewer info

Add a verifybamid2 process with a if clause to separate between wgs and panel data input. In addition the data used by the verifybamid2 software and container has been added to the config.

Type of change

• Documentation
• Patch
• Minor change
• Major change

Checklist

• Self-review of my code
• Update the CHANGELOG
• Tag the latest commit (vX.Y.Z format)
• Log samples used for testing in the Verification_samples_log Excel sheet

Documentation

• At least one other person has reviewed my changes (not required for trivial changes)

Patch

• Stub run completes without errors or new warnings
• At least one other person has reviewed and approved my code (not required for trivial changes)

Major / Minor change

• Stub run completes without errors or new warnings
• onco run finishes without any new warnings/errors and the results can
  be loaded into scout
• wgs single run finishes without any new warnings/errors and the results
  can be loaded into scout
• wgs trio run finishes without any new warnings/errors and the results
  can be loaded into scout
• At least one other person has reviewed and approved my code
• I have made corresponding changes to the documentation (software versions, etc.)

Test/review documentation

Review performed by

• Alexander
• Jakob
• Paul
• Ryan
• Viktor

(Add if missing)

Testing performed by

• Alexander
• Jakob
• Paul
• Ryan
• Viktor

[Jakob37]

Great job 💪 Just some minor points and questions.

Don't forget to add the version to the version document.

I would like to take a final quick look before merge when updated.

[Jakob37]

Looks nice! But please add the version to the version document before merge (that is part of the same repo, so it is just to change that .md file). I'll approve when I see that it is in.

[A97paupic]

The version document is now updated with verifybamid2!

[Jakob37]

The version document is now updated with verifybamid2!

Great!

I don't see it in the PR here though. Have you forgotten to push the changes?

[Jakob37]

OK, looks nice now!

So, remember before merge:

• Tag the last commit "v3.11.1"
• Document testing you have made (I think you ran a panel? and also put it into the "Verification samples log" spreadsheet)