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Analysis of optimal alignments unfolds bias in existing variant profiles (BMC Bioinformatics 2016)

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Indel Analysis

python ../generate_reads.py ../input.txt 50

python ../plain2fa.py ../input.txt

python ../SRalignment_runner.py ../input.txt

python ../mapped_agreement_INDEL.py ../input.txt

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Analysis of optimal alignments unfolds bias in existing variant profiles (BMC Bioinformatics 2016)

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