Clean up project (#13)

.github/workflows/julia-tests.yaml

@@ -0,0 +1,28 @@
+---
+# Julia Tests
+
+name: Correctness - Julia
+on:
+  push:
+    branches: ['main']
+  pull_request:
+    branches: ['main']
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: 1
+      - uses: julia-actions/julia-buildpkg@v1
+      - uses: julia-actions/julia-runtest@v1
+      - uses: julia-actions/julia-processcoverage@v1
+      - uses: codecov/codecov-action@v1
+        with:
+          file: lcov.info
+      - uses: actions/upload-artifact@v3
+        with:
+          name: payloads
+          path: test/logs/

.github/workflows/publish.yaml

@@ -0,0 +1,57 @@
+---
+# Automatically build Docker images on changes to main and push them to a
+# Container Registry using HCL Bake file.
+
+name: Build Docker Images
+# yamllint disable-line rule:truthy
+on:
+  workflow_dispatch:
+  push:
+    branches: ['main']
+    tags: ['*']
+
+jobs:
+  # Call the Lint & Format workflow before publishing
+  verify:
+    uses: ./.github/workflows/lint.yaml
+
+  # Generate a more robust tag for the image
+  tag-generator:
+    name: Determine image tag
+    runs-on: ubuntu-22.04
+    outputs:
+      image-tag: ${{ steps.generate.outputs.tag }}
+    steps:
+      - name: Generate appropriate tag
+        id: generate
+        run: |
+          if [[ '${{ github.ref_type }}' == 'branch' && '${{ github.ref_name }}' == 'main' ]]; then
+            TAG=latest
+          else
+            SEMVER=$( echo ${{ github.ref_name }} | sed -nre 's/^v[^0-9]*(([0-9]+\.)*[0-9]+(-[a-z]+)?).*/\1/p')
+            if [[ -n $SEMVER ]]; then
+              TAG=${SEMVER}
+            else
+              TAG=${{ github.ref_name }}
+            fi
+          fi
+          echo "$TAG"
+          echo "tag=${TAG,,}" >> ${GITHUB_OUTPUT}
+      - name: Show Generated Tag
+        run: echo ${{ steps.generate.outputs.tag }}
+
+  # Build and Publish all targets associated with specified group
+  bake:
+    needs:
+      - verify
+      - tag-generator
+    uses: darpa-askem/.github/.github/workflows/bake-publish.yml@main
+    with:
+      file: 'docker/docker-bake.hcl'
+      group: 'prod'
+      registry: 'ghcr.io'
+      organization: ${{ github.repository_owner }}
+      tag: ${{ needs.tag-generator.outputs.image-tag }}
+    secrets:
+      username: ${{ github.repository_owner }}
+      password: ${{ secrets.GITHUB_TOKEN }}

.gitignore

@@ -1,3 +1,5 @@
+### Python ###
+
 # Eclipse
 .project
 .classpath
@@ -33,5 +35,9 @@ api.env
 # Minio
 .minio.sys
 
+### Julia ###
+test/logs/
+
+### Project ###
 # Config
 config.env

Manifest.toml

@@ -2,7 +2,7 @@
 
 julia_version = "1.8.5"
 manifest_format = "2.0"
-project_hash = "7c273371f028a1fde3fe326deca65beb41affbb7"
+project_hash = "cccb141b5a2246189eea16445310ddc452bd40b4"
 
 [[deps.AbstractAlgebra]]
 deps = ["GroupsCore", "InteractiveUtils", "LinearAlgebra", "MacroTools", "Markdown", "Random", "RandomExtensions", "SparseArrays", "Test"]

Project.toml

@@ -26,3 +26,4 @@ Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
 PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
 SymbolicIndexingInterface = "2efcf032-c050-4f8e-a9bb-153293bab1f5"
 Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7"
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

docker/docker-back.hcl

@@ -0,0 +1,53 @@
+variable "DOCKER_REGISTRY" {
+  default = "ghcr.io"
+}
+variable "DOCKER_ORG" {
+  default = "darpa-askem"
+}
+variable "VERSION" {
+  default = "local"
+}
+
+# ----------------------------------------------------------------------------------------------------------------------
+
+function "tag" {
+  params = [image_name, prefix, suffix]
+  result = [ "${DOCKER_REGISTRY}/${DOCKER_ORG}/${image_name}:${check_prefix(prefix)}${VERSION}${check_suffix(suffix)}" ]
+}
+
+function "check_prefix" {
+  params = [tag]
+  result = notequal("",tag) ? "${tag}-": ""
+}
+
+function "check_suffix" {
+  params = [tag]
+  result = notequal("",tag) ? "-${tag}": ""
+}
+
+# ----------------------------------------------------------------------------------------------------------------------
+
+group "prod" {
+  targets = ["simulation-scheduler"]
+}
+
+group "default" {
+  targets = ["simulation-scheduler-base"]
+}
+
+# ----------------------------------------------------------------------------------------------------------------------
+
+# Removed linux/arm64 for now to ass CI build - Dec 2022
+target "_platforms" {
+  platforms = ["linux/amd64"]
+}
+
+target "simulation-service-base" {
+	context = ".."
+	tags = tag("simulation-scheduler", "", "")
+	dockerfile = "Dockerfile.api"
+}
+
+target "simulation-service" {
+  inherits = ["_platforms", "simulation-service-base"]
+}

src/Scheduler.jl

@@ -30,7 +30,6 @@ Transform request body into splattable dict with correct types
 """
 function get_args(req::Request)::Dict{Symbol,Any}
     args = json(req, Dict{Symbol, Any})
-    # TODO(five): Make conversions more visible (MOVE TO TOP OF FILE?)
     function coerce!(key) # Is there a more idiomatic way of doing this
         if haskey(args, key)
             args[key] = conversions_for_valid_inputs[key](args[key])

test/runtests.jl

@@ -0,0 +1,7 @@
+import Test: @test
+
+# TODO(five): Add actual tests for SciML operations
+@test 1 == 1
+
+# TODO(five): Add actual tests for scheduler API
+@test 2 == 2