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  1. RNAseq_Fhepatica_ovine_PBMC RNAseq_Fhepatica_ovine_PBMC Public

    Analysis of an RNAseq dataset from sheep infected with liver fluke Fasciola hepatica.

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  2. RNAseq_Saureus_cattle_infection RNAseq_Saureus_cattle_infection Public

    All code associated with my RNAseq analysis of two groups of cattle infected with different strains of Staphylococcus aureus. There is 5-6 cows in each group and transcriptomics data was analysed a…

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  3. AMR_correlation AMR_correlation Public

    This is the code used to process fastq files of 147 bovine Escherichia coli isolates to de-novo assembled genomes, followed by screening for antimicrobial resistance genes and data analysis to corr…

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  4. cicd_rinpharma cicd_rinpharma Public

    A repo for CI/CD in R packages workshop, R in Pharma 2022

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  5. workshop-scRNAseq workshop-scRNAseq Public

    Forked from NBISweden/workshop-scRNAseq

    Single cell RNA sequencing analysis course

    Jupyter Notebook

  6. SalmonellaMbandaka SalmonellaMbandaka Public

    bash and R scripts used to analyse a comparative genomic data for S Mbandaka strains, and perform statistisc on phenotypic data

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