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Corrected phase behavior so that two trajectories with the same random seed but different phases (i.e., one had ‘push_apart n m’ and the other had ‘bring_together n m’) will form a single connected trajectory. Previously in this scenario, only the direction of the first imaginary mode would be changed between the two trajectories. Now the direction of every mode will switch directions between the two trajectories.
Added the setup_restart.py script to make it easy to restart Milo jobs.