HMF Tools

This repository contains various algorithms for analyzing genomic sequencing data

Resources used by the HMF algorithms can be downloaded from https://resources.hartwigmedicalfoundation.nl

More detailed descriptions of the following algorithms are available from the links below:

In progress:

Acknowledgements

Hartwig Medical Foundation uses the YourKit Java Profiler for Performance Tuning.

YourKit supports open source projects with innovative and intelligent tools for monitoring and profiling Java and .NET applications. YourKit is the creator of YourKit Java Profiler, YourKit .NET Profiler, YourKit YouMonitor.

Name		Name	Last commit message	Last commit date
Latest commit History 11,300 Commits
amber		amber
api-clients		api-clients
bachelor		bachelor
bam-slicer		bam-slicer
count-bam-lines		count-bam-lines
ensembl-db		ensembl-db
fastq-stats		fastq-stats
gripss		gripss
health-checker		health-checker
hmf-common		hmf-common
hmf-extensions		hmf-extensions
hmf-gene-panel-builder		hmf-gene-panel-builder
hmf-id-generator		hmf-id-generator
iclusion-importer		iclusion-importer
isofox		isofox
knowledgebase-importer		knowledgebase-importer
patient-db		patient-db
patient-reporter		patient-reporter
protect		protect
purity-ploidy-estimator		purity-ploidy-estimator
sage		sage
serve		serve
sig-analyser		sig-analyser
stat-calcs		stat-calcs
strelka-post-process		strelka-post-process
sv-linx		sv-linx
sv-tools		sv-tools
vicc-knowledgebase-importer		vicc-knowledgebase-importer
.gitattributes		.gitattributes
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
hmf_code_scheme.xml		hmf_code_scheme.xml
pom.xml		pom.xml