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Adding config for 20230831 index for SD Cohort Builder. #680

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Adding config for 20230831 index for SD Cohort Builder. #680

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Adding config for 20230831 index for SD Cohort Builder.
billbridgesvumc Jan 19, 2024
4c1fab8
Merge branch 'main' into bridgews/20230831-index
billbridgesvumc Jan 20, 2024
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25 changes: 25 additions & 0 deletions underlay/src/main/resources/config/indexer/sd20230831_vumc.json
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{
"underlay": "sd20230831",
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This underlay name needs to match a file in the config/underlay directory. You can either:

  • Use the existing sd020230331 underlay. This means that the data mapping is exactly the same (e.g. no table name or column data type changes). This is how I test ran the indexing on the refresh dataset. If we use the same underlay for multiple SD datasets, perhaps it would be better to change the underlay name to just sd_version1 or something without the exact date in the name.
  • Create a new sd20230831 underlay. This would let us change the data mapping, even if only slightly. We're going to have to do this eventually to update the race field name race_concept_id -> race_source_concept_id, but doesn't have to be part of this PR.

"bigQuery": {
"sourceData": {
"projectId": "sd-vumc-tanagra-test",
"datasetId": "sd_20230831",
"sqlSubstitutions": {
"omopDataset": "sd-vumc-tanagra-test.sd_20230831",
"staticTablesDataset": "sd-vumc-tanagra-test.sd_20230831"
}
},
"indexData": {
"projectId": "victr-tanagra-deploytest",
"datasetId": "sd_20230831_indexes"
},
"queryProjectId": "victr-tanagra-deploytest",
"dataLocation": "us-central1"
},
"dataflow": {
"serviceAccountEmail": "[email protected]",
"gcsTempDirectory": "gs://dataflow-indexing-victr-tanagra-deploytest/temp/",
"workerMachineType": "n1-standard-4",
"usePublicIps": false
}
}