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@Dfam-consortium

Dfam Consortium

Resources for the Study of Transposable Element Families

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  1. RepeatMasker RepeatMasker Public

    RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

    Perl 227 50

  2. RepeatModeler RepeatModeler Public

    De-Novo Repeat Discovery Tool

    Perl 189 22

  3. TETools TETools Public

    Dfam Transposable Element Tools Docker container.

    Perl 84 17

  4. FamDB FamDB Public

    FamDB file format library and utilities

    Python 16 1

  5. AlignmentSummaryViewer AlignmentSummaryViewer Public

    Multiple sequence alignment visualization component

    HTML 4

  6. RepeatMasker_Nextflow RepeatMasker_Nextflow Public

    Nextflow script for running RepeatMasker on a cluster

    Perl 4

Repositories

Showing 10 of 15 repositories
  • Dfam-API Public

    Dfam API server

    Dfam-consortium/Dfam-API’s past year of commit activity
    JavaScript 1 CC0-1.0 0 0 0 Updated Oct 4, 2024
  • TETools Public

    Dfam Transposable Element Tools Docker container.

    Dfam-consortium/TETools’s past year of commit activity
    Perl 84 CC0-1.0 17 1 0 Updated Oct 1, 2024
  • RepeatMasker Public

    RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

    Dfam-consortium/RepeatMasker’s past year of commit activity
    Perl 227 50 14 3 Updated Sep 25, 2024
  • RepeatModeler Public

    De-Novo Repeat Discovery Tool

    Dfam-consortium/RepeatModeler’s past year of commit activity
    Perl 189 22 104 1 Updated Sep 23, 2024
  • tss_prefilter Public

    Tensor Slide Sketch Alignment Prefilter

    Dfam-consortium/tss_prefilter’s past year of commit activity
    Rust 0 0 0 0 Updated Sep 16, 2024
  • FamDB Public

    FamDB file format library and utilities

    Dfam-consortium/FamDB’s past year of commit activity
    Python 16 1 0 0 Updated Sep 10, 2024
  • Dfam-Portal Public

    Angular website for Dfam resource

    Dfam-consortium/Dfam-Portal’s past year of commit activity
    TypeScript 1 CC0-1.0 1 0 0 Updated Mar 13, 2024
  • RepeatMasker_Nextflow Public

    Nextflow script for running RepeatMasker on a cluster

    Dfam-consortium/RepeatMasker_Nextflow’s past year of commit activity
    Perl 4 0 4 0 Updated Mar 11, 2024
  • polyA Public Forked from TravisWheelerLab/polyA

    Automatically Adjudicate Any And All Arbitrary Annotations, Astutely Adjoin Abutting Alignments, And Also Amputate Anything Amiss (AAAAAAAAAAAAAAAA)

    Dfam-consortium/polyA’s past year of commit activity
    Python 0 BSD-3-Clause 2 0 0 Updated Dec 9, 2022
  • RepeatAfterMe Public

    A package for the extension of repetitive DNA sequences

    Dfam-consortium/RepeatAfterMe’s past year of commit activity
    C 0 CC0-1.0 0 1 0 Updated Sep 13, 2022
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