fix run scripts

dynamics/spam/CMakeLists.txt

@@ -14,7 +14,6 @@ target_include_directories(dycore INTERFACE src/operators)
 target_include_directories(dycore INTERFACE src/timesteppers)
 target_include_directories(dycore INTERFACE src/hamiltonians)
 target_include_directories(dycore INTERFACE src/grids)
-target_include_directories(dycore INTERFACE src/common)
 target_include_directories(dycore INTERFACE src/io)
 target_include_directories(dycore INTERFACE src/core)
 
@@ -84,5 +83,3 @@ endif()
 if ("${PAMC_IO}" STREQUAL "none")
   target_compile_definitions(dycore INTERFACE -DPAMC_NOIO)
 endif()
-
-

standalone/mmf_simplified/pam-c/run_extruded_script.sh

@@ -1,9 +1,34 @@
+#clean up any existing files
 rm *.png *.nc
 cd ../build
 rm driver
-./../pam-c/make_script.sh $3
-mpirun.mpich -n $3 ./driver ../inputs/pamc_input_extruded_$2.yaml
+
+#build model
+source ../../machines/linux_laptop_gnu_mpi_cpu.env
+./cmakescript_pamc.sh PAM_SGS=none PAM_MICRO=none PAMC_MODEL=extrudedmodel PAMC_HAMIL=an PAMC_THERMO=idealgaspottemp PAMC_IO=serial
+make -j 4
+
+#linux_laptop_gnu_mpi_cpu_debug linux_laptop_gnu_mpi_cpu
+#p3 none
+#shoc none
+#ce mce_rho an man
+#idealgaspottemp constkappavirpottemp
+
+
+#run model
+mpirun.mpich -n $1 ./driver ../inputs/pamc_idealized/pamc_input_extruded_densitycurrent.yaml
 cd ../pam-c
 mv ../build/*.nc .
-python3 plot_extrudedmodel2D.py $1
-#python3 plot_extrudedmodel2D_parallel.py $1 ../inputs/pamc_input_extruded_$2.yaml $3
+
+#pamc_input_extruded_densitycurrent
+#pamc_input_extruded_gravitywave
+#pamc_input_extruded_largerisingbubble
+#pamc_input_extruded_moistrisingbubble
+#pamc_input_extruded_risingbubble
+#pamc_input_extruded_twobubbles
+
+
+#plot model
+python3 plot_extrudedmodel2D.py an
+
+#an ce man mce

standalone/mmf_simplified/pam-c/run_layer_script.sh

@@ -1,8 +1,26 @@
+#clean up any existing files
 rm *.png *.nc
 cd ../build
 rm driver
-./../pam-c/make_script.sh $3
-mpirun.mpich -n $3 ./driver ../inputs/pamc_input_layer_$2.yaml
+
+#build model
+source ../../machines/linux_laptop_gnu_mpi_cpu.env
+./cmakescript_pamc.sh PAM_SGS=none PAM_MICRO=none PAMC_MODEL=layermodel PAMC_HAMIL=tswe PAMC_THERMO=none PAMC_IO=serial
+make -j 4
+
+#linux_laptop_gnu_mpi_cpu_debug linux_laptop_gnu_mpi_cpu
+#swe tswe
+
+#run model
+mpirun.mpich -n $1 ./driver ../inputs/pamc_idealized/pamc_input_layer_doublevortex.yaml
 cd ../pam-c
 mv ../build/*.nc .
-python3 plot_layermodel2D.py $1
+
+#pamc_input_layer_bickleyjet
+#pamc_input_layer_doublevortex
+
+
+#plot model
+python3 plot_layermodel2D.py tswe
+
+#swe tswe