remove meanQ

EBIvariation · Aug 27, 2024 · f6ea67f · f6ea67f
1 parent 4d4c468
commit f6ea67f
Show file tree

Hide file tree

Showing 2 changed files with 0 additions and 3 deletions.
diff --git a/src/main/java/uk/ac/ebi/eva/pipeline/jobs/steps/tasklets/FileStatsTasklet.java b/src/main/java/uk/ac/ebi/eva/pipeline/jobs/steps/tasklets/FileStatsTasklet.java
@@ -49,7 +49,6 @@ public class FileStatsTasklet implements Tasklet {
     private static final String KEY_NO_OF_PASS = "nPass";
     private static final String KEY_NO_OF_TRANSITION = "nTi";
     private static final String KEY_NO_OF_TRANSVERSION = "nTv";
-    private static final String KEY_MEANQ = "meanQ";
 
     private static final Set<String> transitions = new HashSet<>(Arrays.asList("AG", "GA", "CT", "TC"));
 
@@ -118,7 +117,6 @@ private void initializeFileIdCountsMap() {
             countsMap.put(KEY_NO_OF_PASS, 0);
             countsMap.put(KEY_NO_OF_TRANSITION, 0);
             countsMap.put(KEY_NO_OF_TRANSVERSION, 0);
-            countsMap.put(KEY_MEANQ, 0);
 
             fileIdCountsMap.put(fileId, countsMap);
         }

diff --git a/src/test/java/uk/ac/ebi/eva/pipeline/configuration/jobs/steps/FileStatsStepTest.java b/src/test/java/uk/ac/ebi/eva/pipeline/configuration/jobs/steps/FileStatsStepTest.java
@@ -114,6 +114,5 @@ public void fileStatsStepShouldCalculateAndLoadStats() {
         assertEquals(300, fileStats.get("nPass"));
         assertEquals(178, fileStats.get("nTi"));
         assertEquals(103, fileStats.get("nTv"));
-        assertEquals(0, fileStats.get("meanQ"));
     }
 }