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update CI workflow for checking for missing installations #389

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Original file line number Diff line number Diff line change
@@ -1,17 +1,17 @@
# documentation: https://help.github.com/en/articles/workflow-syntax-for-github-actions
name: Tests relying on having EESSI pilot repo mounted
name: Check for missing software installations in software.eessi.io
on: [push, pull_request, workflow_dispatch]
permissions:
contents: read # to fetch code (actions/checkout)
jobs:
pilot:
runs-on: ubuntu-20.04
runs-on: ubuntu-22.04
strategy:
fail-fast: false
matrix:
EESSI_VERSION:
- 2023.06
EESSI_SOFTWARE_SUBDIR:
EESSI_SOFTWARE_SUBDIR_OVERRIDE:
- aarch64/generic
- aarch64/neoverse_n1
- aarch64/neoverse_v1
Expand All @@ -29,19 +29,20 @@ jobs:
with:
cvmfs_config_package: https://github.com/EESSI/filesystem-layer/releases/download/latest/cvmfs-config-eessi_latest_all.deb
cvmfs_http_proxy: DIRECT
cvmfs_repositories: pilot.eessi-hpc.org
cvmfs_repositories: software.eessi.io

- name: Test check_missing_installations.sh script
run: |
source /cvmfs/pilot.eessi-hpc.org/versions/${{matrix.EESSI_VERSION}}/init/bash
export EESSI_SOFTWARE_SUBDIR_OVERRIDE=${{matrix.EESSI_SOFTWARE_SUBDIR_OVERRIDE}}
source /cvmfs/software.eessi.io/versions/${{matrix.EESSI_VERSION}}/init/bash
module load EasyBuild
which eb
eb --version
export EESSI_PREFIX=/cvmfs/pilot.eessi-hpc.org/versions/${{matrix.EESSI_VERSION}}
export EESSI_PREFIX=/cvmfs/software.eessi.io/versions/${{matrix.EESSI_VERSION}}
export EESSI_OS_TYPE=linux
export EESSI_SOFTWARE_SUBDIR=${{matrix.EESSI_SOFTWARE_SUBDIR}}
env | grep ^EESSI | sort
echo "just run check_missing_installations.sh (should use eessi-${{matrix.EESSI_VERSION}}.yml)"
for easystack_file in $(ls eessi-${{matrix.EESSI_VERSION}}-eb-*.yml); do
echo "just run check_missing_installations.sh (should use easystacks/software.eessi.io/${{matrix.EESSI_VERSION}}/eessi-${{matrix.EESSI_VERSION}}-*.yml)"
for easystack_file in $(ls easystacks/software.eessi.io/${{matrix.EESSI_VERSION}}/eessi-${{matrix.EESSI_VERSION}}-eb-*.yml); do
echo "check missing installations for ${easystack_file}..."
./check_missing_installations.sh ${easystack_file}
ec=$?
Expand All @@ -50,12 +51,13 @@ jobs:

- name: Test check_missing_installations.sh with missing package (GCC/8.3.0)
run: |
source /cvmfs/pilot.eessi-hpc.org/versions/${{matrix.EESSI_VERSION}}/init/bash
export EESSI_SOFTWARE_SUBDIR_OVERRIDE=${{matrix.EESSI_SOFTWARE_SUBDIR_OVERRIDE}}
source /cvmfs/software.eessi.io/versions/${{matrix.EESSI_VERSION}}/init/bash
module load EasyBuild
which eb
eb --version
export EESSI_PREFIX=/cvmfs/pilot.eessi-hpc.org/versions/${{matrix.EESSI_VERSION}}
export EESSI_PREFIX=/cvmfs/software.eessi.io/versions/${{matrix.EESSI_VERSION}}
export EESSI_OS_TYPE=linux
export EESSI_SOFTWARE_SUBDIR=${{matrix.EESSI_SOFTWARE_SUBDIR}}
env | grep ^EESSI | sort
# create dummy easystack file with a single entry (something that is not installed in EESSI)
easystack_file="test.yml"
Expand Down
2 changes: 1 addition & 1 deletion check_missing_installations.sh
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
#!/bin/bash
#
# Script to check for missing installations in EESSI pilot software stack (version 2023.06)
# Script to check for missing installations in EESSI software stack
#
# author: Kenneth Hoste (@boegel)
# author: Thomas Roeblitz (@trz42)
Expand Down