make `link_nvidia_host_libraries.sh` script a bit more robust, in case target of host_injections directory is a non-existing directory #437

boegel · 2023-12-21T19:56:58Z

If the target of the host_injections variant symlink, you get the following puzzling error:

$ ls -l ${EESSI_CVMFS_REPO}/host_injections
lrwxrwxrwx 1 cvmfs cvmfs 23 Oct  3 13:51 /cvmfs/software.eessi.io/host_injections -> /tmp/opt/eessi

$ scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh
Found ldconfig in the following locations:
- /sbin/ldconfig
- /usr/sbin/ldconfig
Using first version
Found NVIDIA GPU driver version 535.129.03
Found host CUDA version 12.2
Creating /cvmfs/software.eessi.io/host_injections/nvidia/x86_64/host (real path /tmp/opt/eessi/nvidia/x86_64/host) failed with:
 mkdir: cannot create directory ‘/cvmfs/software.eessi.io/host_injections’: File exists
ERROR: No write permissions to directory /cvmfs/software.eessi.io/host_injections/nvidia/x86_64/host

works fine if the target does exist:

$ mkdir /tmp/opt/eessi
$ scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh
Found ldconfig in the following locations:
- /sbin/ldconfig
- /usr/sbin/ldconfig
Using first version
Found NVIDIA GPU driver version 535.129.03
Found host CUDA version 12.2
Downloading latest version of nvliblist.conf from Apptainer to /tmp/tmp.Ko6VDH8wev/nvliblist.conf
Host NVIDIA gpu drivers linked successfully for EESSI

The extra block of code with host_injections_target makes sure the target of the host_injections variant symlink is an existing directory.

If you don't have permissions, you'll also get a clearer error now (though the confusing one is still there):

Creating /opt/eessi (real path /opt/eessi) failed with:
 mkdir: cannot create directory ‘/opt/eessi’: Permission denied
Creating /cvmfs/software.eessi.io/host_injections/nvidia/x86_64/host (real path /opt/eessi/nvidia/x86_64/host) failed with:
 mkdir: cannot create directory ‘/cvmfs/software.eessi.io/host_injections’: File exists
ERROR: No write permissions to directory /cvmfs/software.eessi.io/host_injections/nvidia/x86_64/host

I've also added some extra informative messages, like mentioning GPU driver version that was found, etc., and muted the useless download progress output produced by curl by using --silent.

…target of host_injections directory is a non-existing directory

eessi-bot · 2023-12-21T19:57:02Z

Instance eessi-bot-mc-aws is configured to build:

arch x86_64/generic for repo eessi-hpc.org-2023.06-compat
arch x86_64/generic for repo eessi-hpc.org-2023.06-software
arch x86_64/generic for repo eessi.io-2023.06-compat
arch x86_64/generic for repo eessi.io-2023.06-software
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/haswell for repo eessi.io-2023.06-compat
arch x86_64/intel/haswell for repo eessi.io-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-software
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen2 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen2 for repo eessi.io-2023.06-software
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen3 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen3 for repo eessi.io-2023.06-software
arch aarch64/generic for repo eessi-hpc.org-2023.06-compat
arch aarch64/generic for repo eessi-hpc.org-2023.06-software
arch aarch64/generic for repo eessi.io-2023.06-compat
arch aarch64/generic for repo eessi.io-2023.06-software
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-software
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-software

ocaisa · 2023-12-21T20:57:57Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512

eessi-bot · 2023-12-21T20:58:00Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 2742, for details & status see make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437 (comment)

eessi-bot · 2023-12-21T20:58:04Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_437/2742

date	job status	comment
Dec 21 20:58:03 UTC 2023	submitted	job id `2742` awaits release by job manager
Dec 21 20:58:45 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 21 21:03:46 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-2742.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1703192603.tar.gz` size: 0 MiB (111853 bytes) entries: 7 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all no module files in tarball software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software no software packages in tarball other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh` `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 21 21:03:46 UTC 2023	test result	(no tests yet)

ocaisa · 2023-12-21T21:11:15Z

@boegel So the failure is probably because there is no easystack change in the PR so EasyBuild never gets called, we should add some kind of or clause when no yaml is touched that just prints "No missing installations"

…. Relevant for PRs that e.g. only update things in .../scripts

casparvl · 2023-12-22T10:40:09Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512

eessi-bot · 2023-12-22T10:40:12Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 2791, for details & status see make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437 (comment)

eessi-bot · 2023-12-22T10:40:16Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_437/2791

date	job status	comment
Dec 22 10:40:15 UTC 2023	submitted	job id `2791` awaits release by job manager
Dec 22 10:40:52 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 22 10:45:53 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2791.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1703241926.tar.gz` size: 0 MiB (111854 bytes) entries: 7 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all no module files in tarball software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software no software packages in tarball other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh` `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 22 10:45:53 UTC 2023	test result	(no tests yet)

ocaisa · 2023-12-22T10:50:39Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2023-12-22T10:50:42Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 2792, for details & status see make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 2793, for details & status see make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 2794, for details & status see make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 2795, for details & status see make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 2796, for details & status see make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 2797, for details & status see make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 2798, for details & status see make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 2799, for details & status see make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437 (comment)

eessi-bot · 2023-12-22T10:50:46Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_437/2792

date	job status	comment
Dec 22 10:50:45 UTC 2023	submitted	job id `2792` awaits release by job manager
Dec 22 10:50:56 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 22 10:56:13 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2792.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1703242529.tar.gz` size: 0 MiB (111501 bytes) entries: 7 modules under 2023.06/software/linux/x86_64/generic/modules/all no module files in tarball software under 2023.06/software/linux/x86_64/generic/software no software packages in tarball other under 2023.06/software/linux/x86_64/generic `2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh` `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 22 10:56:13 UTC 2023	test result	(no tests yet)

eessi-bot · 2023-12-22T10:50:50Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_437/2793

date	job status	comment
Dec 22 10:50:49 UTC 2023	submitted	job id `2793` awaits release by job manager
Dec 22 10:50:58 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 22 10:56:15 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2793.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1703242557.tar.gz` size: 0 MiB (111680 bytes) entries: 7 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all no module files in tarball software under 2023.06/software/linux/x86_64/intel/haswell/software no software packages in tarball other under 2023.06/software/linux/x86_64/intel/haswell `2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh` `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 22 10:56:15 UTC 2023	test result	(no tests yet)

eessi-bot · 2023-12-22T10:50:54Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_437/2794

date	job status	comment
Dec 22 10:50:53 UTC 2023	submitted	job id `2794` awaits release by job manager
Dec 22 10:51:00 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 22 10:52:11 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2794.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1703242267.tar.gz` size: 0 MiB (111854 bytes) entries: 7 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all no module files in tarball software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software no software packages in tarball other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh` `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 22 10:52:11 UTC 2023	test result	(no tests yet)

eessi-bot · 2023-12-22T10:50:58Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_437/2795

date	job status	comment
Dec 22 10:50:57 UTC 2023	submitted	job id `2795` awaits release by job manager
Dec 22 10:52:08 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 22 10:59:24 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2795.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1703242738.tar.gz` size: 0 MiB (111517 bytes) entries: 7 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all no module files in tarball software under 2023.06/software/linux/x86_64/amd/zen2/software no software packages in tarball other under 2023.06/software/linux/x86_64/amd/zen2 `2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh` `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 22 10:59:24 UTC 2023	test result	(no tests yet)

eessi-bot · 2023-12-22T10:51:02Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_437/2796

date	job status	comment
Dec 22 10:51:01 UTC 2023	submitted	job id `2796` awaits release by job manager
Dec 22 10:52:10 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 22 10:59:26 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2796.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1703242737.tar.gz` size: 0 MiB (111519 bytes) entries: 7 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all no module files in tarball software under 2023.06/software/linux/x86_64/amd/zen3/software no software packages in tarball other under 2023.06/software/linux/x86_64/amd/zen3 `2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh` `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 22 10:59:26 UTC 2023	test result	(no tests yet)

eessi-bot · 2023-12-22T10:51:05Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_437/2797

date	job status	comment
Dec 22 10:51:05 UTC 2023	submitted	job id `2797` awaits release by job manager
Dec 22 10:52:02 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 22 10:57:18 UTC 2023	running	job `2797` is running
Dec 22 10:58:19 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2797.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1703242649.tar.gz` size: 0 MiB (111080 bytes) entries: 7 modules under 2023.06/software/linux/aarch64/generic/modules/all no module files in tarball software under 2023.06/software/linux/aarch64/generic/software no software packages in tarball other under 2023.06/software/linux/aarch64/generic `2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh` `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 22 10:58:19 UTC 2023	test result	(no tests yet)

eessi-bot · 2023-12-22T10:51:10Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_437/2798

date	job status	comment
Dec 22 10:51:09 UTC 2023	submitted	job id `2798` awaits release by job manager
Dec 22 10:52:04 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 22 10:58:21 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2798.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1703242679.tar.gz` size: 0 MiB (111239 bytes) entries: 7 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all no module files in tarball software under 2023.06/software/linux/aarch64/neoverse_n1/software no software packages in tarball other under 2023.06/software/linux/aarch64/neoverse_n1 `2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh` `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 22 10:58:21 UTC 2023	test result	(no tests yet)

eessi-bot · 2023-12-22T10:51:14Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_437/2799

date	job status	comment
Dec 22 10:51:13 UTC 2023	submitted	job id `2799` awaits release by job manager
Dec 22 10:52:06 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 22 10:58:22 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2799.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1703242678.tar.gz` size: 0 MiB (111241 bytes) entries: 7 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all no module files in tarball software under 2023.06/software/linux/aarch64/neoverse_v1/software no software packages in tarball other under 2023.06/software/linux/aarch64/neoverse_v1 `2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh` `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 22 10:58:22 UTC 2023	test result	(no tests yet)

EESSI-install-software.sh

casparvl · 2023-12-22T13:55:12Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2023-12-22T13:55:15Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 2800, for details & status see make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 2801, for details & status see make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 2802, for details & status see make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 2803, for details & status see make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 2804, for details & status see make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 2805, for details & status see make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 2806, for details & status see make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 2807, for details & status see make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437 (comment)

eessi-bot · 2023-12-22T13:55:19Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_437/2800

date	job status	comment
Dec 22 13:55:18 UTC 2023	submitted	job id `2800` awaits release by job manager
Dec 22 13:55:48 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 22 14:01:03 UTC 2023	running	job `2800` is running
Dec 22 14:02:09 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2800.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1703253661.tar.gz` size: 0 MiB (111504 bytes) entries: 7 modules under 2023.06/software/linux/x86_64/generic/modules/all no module files in tarball software under 2023.06/software/linux/x86_64/generic/software no software packages in tarball other under 2023.06/software/linux/x86_64/generic `2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh` `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 22 14:02:09 UTC 2023	test result	(no tests yet)
Dec 22 14:35:04 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1703253661.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-12-22T13:55:23Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_437/2801

date	job status	comment
Dec 22 13:55:22 UTC 2023	submitted	job id `2801` awaits release by job manager
Dec 22 13:55:50 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 22 14:02:11 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2801.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1703253718.tar.gz` size: 0 MiB (111681 bytes) entries: 7 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all no module files in tarball software under 2023.06/software/linux/x86_64/intel/haswell/software no software packages in tarball other under 2023.06/software/linux/x86_64/intel/haswell `2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh` `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 22 14:02:11 UTC 2023	test result	(no tests yet)
Dec 22 14:35:22 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-haswell-1703253718.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-12-22T13:55:27Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_437/2802

date	job status	comment
Dec 22 13:55:26 UTC 2023	submitted	job id `2802` awaits release by job manager
Dec 22 13:55:52 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 22 14:03:12 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2802.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1703253776.tar.gz` size: 0 MiB (111853 bytes) entries: 7 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all no module files in tarball software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software no software packages in tarball other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh` `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 22 14:03:12 UTC 2023	test result	(no tests yet)
Dec 22 14:35:40 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1703253776.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-12-22T13:55:31Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_437/2803

date	job status	comment
Dec 22 13:55:30 UTC 2023	submitted	job id `2803` awaits release by job manager
Dec 22 13:55:44 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 22 14:00:59 UTC 2023	running	job `2803` is running
Dec 22 14:02:06 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2803.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1703253660.tar.gz` size: 0 MiB (111522 bytes) entries: 7 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all no module files in tarball software under 2023.06/software/linux/x86_64/amd/zen2/software no software packages in tarball other under 2023.06/software/linux/x86_64/amd/zen2 `2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh` `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 22 14:02:06 UTC 2023	test result	(no tests yet)
Dec 22 14:35:59 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1703253660.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-12-22T13:55:34Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_437/2804

date	job status	comment
Dec 22 13:55:33 UTC 2023	submitted	job id `2804` awaits release by job manager
Dec 22 13:55:46 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 22 14:01:01 UTC 2023	running	job `2804` is running
Dec 22 14:02:07 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2804.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1703253659.tar.gz` size: 0 MiB (111521 bytes) entries: 7 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all no module files in tarball software under 2023.06/software/linux/x86_64/amd/zen3/software no software packages in tarball other under 2023.06/software/linux/x86_64/amd/zen3 `2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh` `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 22 14:02:07 UTC 2023	test result	(no tests yet)
Dec 22 14:36:18 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen3-1703253659.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-12-22T13:55:38Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_437/2805

date	job status	comment
Dec 22 13:55:38 UTC 2023	submitted	job id `2805` awaits release by job manager
Dec 22 13:55:42 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 22 14:01:04 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2805.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1703253632.tar.gz` size: 0 MiB (111082 bytes) entries: 7 modules under 2023.06/software/linux/aarch64/generic/modules/all no module files in tarball software under 2023.06/software/linux/aarch64/generic/software no software packages in tarball other under 2023.06/software/linux/aarch64/generic `2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh` `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 22 14:01:04 UTC 2023	test result	(no tests yet)
Dec 22 14:36:36 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1703253632.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-12-22T13:55:42Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_437/2806

date	job status	comment
Dec 22 13:55:41 UTC 2023	submitted	job id `2806` awaits release by job manager
Dec 22 13:56:54 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 22 14:05:15 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2806.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1703253902.tar.gz` size: 0 MiB (111240 bytes) entries: 7 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all no module files in tarball software under 2023.06/software/linux/aarch64/neoverse_n1/software no software packages in tarball other under 2023.06/software/linux/aarch64/neoverse_n1 `2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh` `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 22 14:05:15 UTC 2023	test result	(no tests yet)
Dec 22 14:36:54 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_n1-1703253902.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-12-22T13:55:46Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_437/2807

date	job status	comment
Dec 22 13:55:45 UTC 2023	submitted	job id `2807` awaits release by job manager
Dec 22 13:56:56 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 22 14:05:17 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2807.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1703253900.tar.gz` size: 0 MiB (111242 bytes) entries: 7 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all no module files in tarball software under 2023.06/software/linux/aarch64/neoverse_v1/software no software packages in tarball other under 2023.06/software/linux/aarch64/neoverse_v1 `2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh` `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 22 14:05:17 UTC 2023	test result	(no tests yet)
Dec 22 14:37:13 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_v1-1703253900.tar.gz` to S3 bucket succeeded

boegel · 2023-12-22T17:37:19Z

@ocaisa @casparvl Ready to merge, since it's deployed:

$ date
Fri Dec 22 18:36:35 CET 2023

$ grep host_injections_target /cvmfs/software.eessi.io/versions/2023.06/scripts/gpu_support/nvidia/link_nvidia_host_libraries.sh
host_injections_target=$(realpath -m ${EESSI_CVMFS_REPO}/host_injections)
if [ ! -d ${host_injections_target} ]; then
    create_directory_structure ${host_injections_target}

….1-gompi/2023a {2023.06}[gompi/2023a] amdahl V0.3.1

make link_nvidia_host_libraries.sh script a bit more robust, in case …

60741ae

…target of host_injections directory is a non-existing directory

boegel added the 2023.06-software.eessi.io 2023.06 version of software.eessi.io label Dec 21, 2023

boegel requested a review from ocaisa December 21, 2023 19:57

ocaisa previously approved these changes Dec 21, 2023

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Ensure that bot reports success if no EasyStacks were changed in a PR…

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…. Relevant for PRs that e.g. only update things in .../scripts

casparvl dismissed ocaisa’s stale review via 5c248d1 December 22, 2023 10:39

ocaisa previously approved these changes Dec 22, 2023

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ocaisa added the bot:deploy Ask bot to deploy missing software installations to EESSI label Dec 22, 2023

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Make the pedantic deploy step of the bot happy...

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casparvl dismissed ocaisa’s stale review via ac53cf0 December 22, 2023 13:54

casparvl added bot:deploy Ask bot to deploy missing software installations to EESSI and removed bot:deploy Ask bot to deploy missing software installations to EESSI labels Dec 22, 2023

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casparvl merged commit 44b563c into EESSI:2023.06-software.eessi.io Dec 22, 2023
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TopRichard added a commit to TopRichard/bot-software-layer1 that referenced this pull request Jul 26, 2024

Merge pull request EESSI#437 from TopRichard/nessi-2023.06-amdahl/0.3…

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….1-gompi/2023a {2023.06}[gompi/2023a] amdahl V0.3.1

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make `link_nvidia_host_libraries.sh` script a bit more robust, in case target of host_injections directory is a non-existing directory #437

make `link_nvidia_host_libraries.sh` script a bit more robust, in case target of host_injections directory is a non-existing directory #437

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boegel commented Dec 22, 2023

make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437

make link_nvidia_host_libraries.sh script a bit more robust, in case target of host_injections directory is a non-existing directory #437

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boegel commented Dec 22, 2023

make `link_nvidia_host_libraries.sh` script a bit more robust, in case target of host_injections directory is a non-existing directory #437

make `link_nvidia_host_libraries.sh` script a bit more robust, in case target of host_injections directory is a non-existing directory #437

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