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Initial archdetect support for RISC-V and custom init script for RISC-V repo #568

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Initial archdetect support for RISC-V and custom init script for RISC-V repo #568

wants to merge 85 commits into from

Commits on Jan 10, 2024

  1. add zen4 / AMD Genoa

    @hmeiland
    hmeiland committed Jan 10, 2024
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  2. add all.output tests

    @hmeiland
    hmeiland committed Jan 10, 2024
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  3. adding zen4 checks

    @hmeiland
    hmeiland committed Jan 10, 2024
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  4. commenting out power to prevent conflict

    @hmeiland
    hmeiland committed Jan 10, 2024
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  5. commenting out power9 to prevent conflict

    @hmeiland
    hmeiland committed Jan 10, 2024
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  6. move to software.eessi.io

    @hmeiland
    hmeiland committed Jan 10, 2024
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  7. move from pilot to software

    @hmeiland
    hmeiland committed Jan 10, 2024
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Commits on Jan 11, 2024

  1. move EESSI action to v3

    @hmeiland
    hmeiland committed Jan 11, 2024
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Commits on Jan 15, 2024

  1. fix upstream merge

    @hmeiland
    hmeiland committed Jan 15, 2024
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  2. megerd

    @hmeiland
    hmeiland committed Jan 15, 2024
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Commits on Mar 13, 2024

  1. {2023.06}[foss/2023b] GROMACS 2024.1

    @boegel
    boegel committed Mar 13, 2024
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  2. Merge branch '2023.06-software.eessi.io' into 2023.06-software.eessi.… 

    …io_GROMACS-2024.1
    @boegel
    boegel committed Mar 13, 2024
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  3. Merge branch '2023.06-software.eessi.io' into 2023.06-software.eessi.… 

    …io_GROMACS-2024.1
    @boegel
    boegel committed Mar 13, 2024
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Commits on Mar 15, 2024

  1. Merge remote-tracking branch 'upstream/2023.06-software.eessi.io' int… 

    …o 2023.06-software.eessi.io_GROMACS-2024.1
    @ocaisa
    ocaisa committed Mar 15, 2024
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Commits on Mar 18, 2024

  1. Merge remote-tracking branch 'upstream/2023.06-software.eessi.io' int… 

    …o 2023.06-software.eessi.io_GROMACS-2024.1
    @ocaisa
    ocaisa committed Mar 18, 2024
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Commits on Mar 30, 2024

  1. add R-bundle-Bioconductor-3.16-foss-2022b-R-4.2.2.eb

    @bedroge
    bedroge committed Mar 30, 2024
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Commits on Apr 2, 2024

  1. Merge branch '2023.06-software.eessi.io' into 2023.06-software.eessi.… 

    …io_GROMACS-2024.1
    @boegel
    boegel committed Apr 2, 2024
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  2. Merge branch '2023.06-software.eessi.io_GROMACS-2024.1' of github.com… 

    …:boegel/software-layer into 2023.06-software.eessi.io_GROMACS-2024.1
    @boegel
    boegel committed Apr 2, 2024
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Commits on Apr 3, 2024

  1. Add possibility to ignore certain hooks on local modules. E.g. we don… 

    …'t want to be prevented from loading local CUDA modules because of the EESSI hook. See EESSI#523
    Caspar van Leeuwen committed Apr 3, 2024
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  2. Also use hooks for site extensions in host_injections AND for user ex… 

    …tensions in /home/casparl/eessi/...
    Caspar van Leeuwen committed Apr 3, 2024
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  3. Leave breadcrumb to notify that paths may need to be changed in the f… 

    …uture
    Caspar van Leeuwen committed Apr 3, 2024
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Commits on Apr 4, 2024

  1. Merge branch '2023.06-software.eessi.io' into 2023.06-software.eessi.… 

    …io_GROMACS-2024.1
    @ocaisa
    ocaisa committed Apr 4, 2024
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Commits on Apr 5, 2024

  1. add R-bundle-Bioconductor-3.18-foss-2023a-R-4.3.2.eb

    @bedroge
    bedroge committed Apr 5, 2024
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  2. Merge branch '2023.06-software.eessi.io' into bioconductor-3.18-2023a

    @bedroge
    bedroge committed Apr 5, 2024
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  3. add from-pr to bioconductor

    @bedroge
    bedroge committed Apr 5, 2024
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  4. sync with 2023.06-software.eessi.io branch

    @bedroge
    bedroge committed Apr 5, 2024
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Commits on Apr 8, 2024

  1. use pr 20316 for Bioconductor

    @bedroge
    bedroge committed Apr 8, 2024
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  2. use PR 20316 for Bioconductor

    @bedroge
    bedroge committed Apr 8, 2024
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Commits on Apr 16, 2024

  1. remove build_container.sh, as we now use eessi_container.sh

    @bedroge
    bedroge committed Apr 16, 2024
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  2. replace build_container.sh by eessi_container.sh

    @bedroge
    bedroge committed Apr 16, 2024
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Commits on Apr 19, 2024

  1. Merge branch '2023.06-software.eessi.io' of github.com:EESSI/software… 

    …-layer into bioconductor_2022b
    @bedroge
    bedroge committed Apr 19, 2024
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  2. move bioconductor to 4.9.1 easystack

    @bedroge
    bedroge committed Apr 19, 2024
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  3. add bioconductor

    @bedroge
    bedroge committed Apr 19, 2024
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  4. solve merge conflict

    @bedroge
    bedroge committed Apr 19, 2024
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  5. Merge branch '2023.06-software.eessi.io' of github.com:EESSI/software… 

    …-layer into bioconductor-3.18-2023a
    @bedroge
    bedroge committed Apr 19, 2024
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  6. move biocondutor to 4.9.1 stack, use pr 20379

    @bedroge
    bedroge committed Apr 19, 2024
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  7. remove blank line

    @bedroge
    bedroge committed Apr 19, 2024
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  8. move bioconductor back to 4.9.0 file

    @bedroge
    bedroge committed Apr 19, 2024
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  9. add rebuild easystack for setuptools_scm fix

    @bedroge
    bedroge committed Apr 19, 2024
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Commits on Apr 20, 2024

  1. zen4-only {2023.06}[system] EasyBuild v4.9.1

    @truib
    truib committed Apr 20, 2024
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  2. make sure lmod cfg files exists early in build environment

    @truib
    truib committed Apr 20, 2024
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  3. use create_lmodsitepackage.py

    @truib
    truib committed Apr 20, 2024
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  4. skip CUDA install if no EasyBuild module is found

    @truib
    truib committed Apr 20, 2024
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  5. remove extra if

    @truib
    truib committed Apr 20, 2024
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Commits on Apr 21, 2024

  1. Add SAMtools-1.18-GCC-12.3.0

    @Neves-P
    Neves-P committed Apr 21, 2024
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Commits on Apr 22, 2024

  1. attempt to fix the hatchling reinstallation issue

    @bedroge
    bedroge committed Apr 22, 2024
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  2. use right if condition for checking if dir is empty

    @bedroge
    bedroge committed Apr 22, 2024
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Commits on Apr 25, 2024

  1. Merge pull request EESSI#553 from Neves-P/2023.06-software.eessi.io-S… 

    …AMtools-1.18-GCC-12.3.0

{2023.06}[foss/2023a] SAMtools v1.18
    @bedroge
    bedroge committed Apr 25, 2024
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Commits on Apr 26, 2024

  1. Merge pull request EESSI#526 from bedroge/bioconductor_2022b 

    {2023.06}[2022b] R-bundle-Bioconductor v3.16
    @trz42
    trz42 committed Apr 26, 2024
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  2. undo parent dir removal, workaround didn't work

    @bedroge
    bedroge committed Apr 26, 2024
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  3. only rebuild 2023a easyconfigs

    @bedroge
    bedroge committed Apr 26, 2024
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  4. only try 2023b versions

    @bedroge
    bedroge committed Apr 26, 2024
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  5. try adding write permissions instead of removing

    @bedroge
    bedroge committed Apr 26, 2024
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  6. do remove the module to make sure it gets rebuilt

    @bedroge
    bedroge committed Apr 26, 2024
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Commits on Apr 29, 2024

  1. Update create_lmodsitepackage.py

    @ocaisa
    ocaisa committed Apr 29, 2024
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Commits on Apr 30, 2024

  1. Merge branch '2023.06-software.eessi.io' into 2023.06-software.eessi.… 

    …io_GROMACS-2024.1
    @boegel
    boegel committed Apr 30, 2024
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  2. Merge branch '2023.06-software.eessi.io_GROMACS-2024.1' of github.com… 

    …:boegel/software-layer into 2023.06-software.eessi.io_GROMACS-2024.1
    @boegel
    boegel committed Apr 30, 2024
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  3. use easyconfig PR for GROMACS 2024.1 that uses backported patch to fi… 

    …x problems with tests
    @boegel
    boegel committed Apr 30, 2024
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  4. restore easystack, rebuild all required versions

    @bedroge
    bedroge committed Apr 30, 2024
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  5. undo changes

    @bedroge
    bedroge committed Apr 30, 2024
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  6. avoid building GROMACS 2024.1 with SVE on Neoverse V1, stick to Neon … 

    …for now (cfr. https://gitlab.com/gromacs/gromacs/-/issues/5057)
    @boegel
    boegel committed Apr 30, 2024
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  7. Merge branch '2023.06-software.eessi.io' of github.com:EESSI/software… 

    …-layer into bioconductor-3.18-2023a
    @bedroge
    bedroge committed Apr 30, 2024
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  8. move bioconductor to eb 4.9.1 file

    @bedroge
    bedroge committed Apr 30, 2024
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  9. Merge pull request EESSI#546 from bedroge/rebuild_python_eb491 

    Rebuild `hatchling 1.18.0`, `Python 3.11.*`, `Python-bundle-PyPI-2023.*` to solve `setuptools_scm` issue
    @boegel
    boegel committed Apr 30, 2024
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Commits on May 1, 2024

  1. Merge pull request EESSI#533 from bedroge/bioconductor-3.18-2023a 

    [2023.06]{2023a} R-bundle-Bioconductor v3.18
    @ocaisa
    ocaisa committed May 1, 2024
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  2. register known issue for GROMACS 2024.1 on neoverse_v1

    @boegel
    boegel committed May 1, 2024
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  3. Merge pull request EESSI#499 from boegel/2023.06-software.eessi.io_GR… 

    …OMACS-2024.1

{2023.06}[foss/2023b] GROMACS 2024.1
    @bedroge
    bedroge committed May 1, 2024
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Commits on May 2, 2024

  1. Merge pull request EESSI#544 from bedroge/remove_old_container_script 

    Remove `build_container.sh` script (replaced by more capable `eessi_container.sh`)
    @boegel
    boegel committed May 2, 2024
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Commits on May 6, 2024

  1. Match name stub of files to CUDA allow list to ship

    @ocaisa
    ocaisa committed May 6, 2024
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  2. Update 2024.05.06-eb-4.9.1-CUDA-12.1.1-ship-full-runtime.yml

    @ocaisa
    ocaisa committed May 6, 2024
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Commits on May 7, 2024

  1. Merge pull request EESSI#559 from ocaisa/rebuild_cuda 

    Ship matches for name stubs of `allowlist` for CUDA
    @bedroge
    bedroge committed May 7, 2024
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  2. Merge pull request EESSI#451 from hmeiland/feature-zen4 

    add support for detecting zen4 in archspec
    @boegel
    boegel committed May 7, 2024
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  3. move OSU-Micro-Benchmarks 2023b to 2023b easystack

    @bedroge
    bedroge committed May 7, 2024
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  4. Merge pull request EESSI#561 from bedroge/OSU_easystack_fix 

    move OSU-Micro-Benchmarks 2023b to 2023b easystack
    @boegel
    boegel committed May 7, 2024
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  5. bumping scorecard-action version to 2.3.1

    @truib
    truib committed May 7, 2024
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  6. Merge pull request EESSI#547 from trz42/test_bot_on_azure 

    {2023.06,zen4}[system] EasyBuild v4.9.1
    @bedroge
    bedroge committed May 7, 2024
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  7. Merge pull request EESSI#562 from trz42/bump_scorecard_action_version 

    bumping scorecard-action version to 2.3.1
    @boegel
    boegel committed May 7, 2024
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  8. Merge pull request EESSI#530 from casparvl/ignore_eessi_hooks_on_loca… 

    …l_modules

Add possibility to ignore certain hooks on local modules
    @trz42
    trz42 committed May 7, 2024
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  9. add initial RISC-V support

    @bedroge
    bedroge committed May 7, 2024
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  10. add (empty) arch specs for RISC-V

    @bedroge
    bedroge committed May 7, 2024
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  11. remove easystacks from production repo

    @bedroge
    bedroge committed May 7, 2024
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  12. set EESSI_CVMFS_REPO and EESSI_VERSION to correct values for RISC-V repo

    @bedroge
    bedroge committed May 7, 2024
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  13. sync with 2023.06-software.eessi.io branch

    @bedroge
    bedroge committed May 7, 2024
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  14. update README

    @bedroge
    bedroge committed May 7, 2024
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  15. remove unused versions dir

    @bedroge
    bedroge committed May 7, 2024
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